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MFSD6 (major facilitator superfamily domain containing 6)

Identity

Alias_symbol (synonym)FLJ20160
Other aliasMMR2
hMMR2
HGNC (Hugo) MFSD6
LocusID (NCBI) 54842
Atlas_Id 68944
Location 2q32.2  [Link to chromosome band 2q32]
Location_base_pair Starts at 190408355 and ends at 190502315 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MFSD6 (2q32.2) / C2orf88 (2q32.2)MFSD6 (2q32.2) / CALCRL (2q32.1)MFSD6 (2q32.2) / CXorf66 (Xq27.1)
MFSD6 (2q32.2) / INPP1 (2q32.2)MFSD6 CXorf66MFSD6 C2orf88

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFSD6   24711
Cards
Entrez_Gene (NCBI)MFSD6  54842  major facilitator superfamily domain containing 6
AliasesMMR2; hMMR2
GeneCards (Weizmann)MFSD6
Ensembl hg19 (Hinxton)ENSG00000151690 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151690 [Gene_View]  chr2:190408355-190502315 [Contig_View]  MFSD6 [Vega]
ICGC DataPortalENSG00000151690
TCGA cBioPortalMFSD6
AceView (NCBI)MFSD6
Genatlas (Paris)MFSD6
WikiGenes54842
SOURCE (Princeton)MFSD6
Genetics Home Reference (NIH)MFSD6
Genomic and cartography
GoldenPath hg38 (UCSC)MFSD6  -     chr2:190408355-190502315 +  2q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFSD6  -     2q32.2   [Description]    (hg19-Feb_2009)
EnsemblMFSD6 - 2q32.2 [CytoView hg19]  MFSD6 - 2q32.2 [CytoView hg38]
Mapping of homologs : NCBIMFSD6 [Mapview hg19]  MFSD6 [Mapview hg38]
OMIM613476   
Gene and transcription
Genbank (Entrez)AB472299 AK000167 AK021420 AK098085 AK127176
RefSeq transcript (Entrez)NM_017694
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFSD6
Cluster EST : UnigeneHs.744117 [ NCBI ]
CGAP (NCI)Hs.744117
Alternative Splicing GalleryENSG00000151690
Gene ExpressionMFSD6 [ NCBI-GEO ]   MFSD6 [ EBI - ARRAY_EXPRESS ]   MFSD6 [ SEEK ]   MFSD6 [ MEM ]
Gene Expression Viewer (FireBrowse)MFSD6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54842
GTEX Portal (Tissue expression)MFSD6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZSS7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZSS7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZSS7
Splice isoforms : SwissVarQ6ZSS7
PhosPhoSitePlusQ6ZSS7
Domains : Interpro (EBI)MFS_assoc_dom    MFS_dom   
Domain families : Pfam (Sanger)MFS_1_like (PF12832)   
Domain families : Pfam (NCBI)pfam12832   
Conserved Domain (NCBI)MFSD6
DMDM Disease mutations54842
Blocks (Seattle)MFSD6
SuperfamilyQ6ZSS7
Human Protein AtlasENSG00000151690
Peptide AtlasQ6ZSS7
HPRD13369
IPIIPI00328555   IPI00917300   IPI00917451   IPI00916805   IPI00916647   IPI00917773   IPI00917042   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZSS7
IntAct (EBI)Q6ZSS7
FunCoupENSG00000151690
BioGRIDMFSD6
STRING (EMBL)MFSD6
ZODIACMFSD6
Ontologies - Pathways
QuickGOQ6ZSS7
Ontology : AmiGOmembrane  integral component of membrane  
Ontology : EGO-EBImembrane  integral component of membrane  
NDEx NetworkMFSD6
Atlas of Cancer Signalling NetworkMFSD6
Wikipedia pathwaysMFSD6
Orthology - Evolution
OrthoDB54842
GeneTree (enSembl)ENSG00000151690
Phylogenetic Trees/Animal Genes : TreeFamMFSD6
HOVERGENQ6ZSS7
HOGENOMQ6ZSS7
Homologs : HomoloGeneMFSD6
Homology/Alignments : Family Browser (UCSC)MFSD6
Gene fusions - Rearrangements
Fusion: TCGAMFSD6 CXorf66
Fusion: TCGAMFSD6 C2orf88
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFSD6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFSD6
dbVarMFSD6
ClinVarMFSD6
1000_GenomesMFSD6 
Exome Variant ServerMFSD6
ExAC (Exome Aggregation Consortium)MFSD6 (select the gene name)
Genetic variants : HAPMAP54842
Genomic Variants (DGV)MFSD6 [DGVbeta]
DECIPHERMFSD6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFSD6 
Mutations
ICGC Data PortalMFSD6 
TCGA Data PortalMFSD6 
Broad Tumor PortalMFSD6
OASIS PortalMFSD6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFSD6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFSD6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFSD6
DgiDB (Drug Gene Interaction Database)MFSD6
DoCM (Curated mutations)MFSD6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFSD6 (select a term)
intoGenMFSD6
Cancer3DMFSD6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613476   
Orphanet
MedgenMFSD6
Genetic Testing Registry MFSD6
NextProtQ6ZSS7 [Medical]
TSGene54842
GENETestsMFSD6
Target ValidationMFSD6
Huge Navigator MFSD6 [HugePedia]
snp3D : Map Gene to Disease54842
BioCentury BCIQMFSD6
ClinGenMFSD6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54842
Chemical/Pharm GKB GenePA164722278
Clinical trialMFSD6
Miscellaneous
canSAR (ICR)MFSD6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFSD6
EVEXMFSD6
GoPubMedMFSD6
iHOPMFSD6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:26:01 CEST 2017

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