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MFSD9 (major facilitator superfamily domain containing 9)

Identity

Alias_symbol (synonym)MGC11332
Other alias-
HGNC (Hugo) MFSD9
LocusID (NCBI) 84804
Atlas_Id 68947
Location 2q12.1  [Link to chromosome band 2q12]
Location_base_pair Starts at 102714626 and ends at 102736888 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BPHL (6p25.2) / MFSD9 (2q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MFSD9   28158
Cards
Entrez_Gene (NCBI)MFSD9  84804  major facilitator superfamily domain containing 9
Aliases
GeneCards (Weizmann)MFSD9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr2:102714626-102736888 [Contig_View]  MFSD9 [Vega]
TCGA cBioPortalMFSD9
AceView (NCBI)MFSD9
Genatlas (Paris)MFSD9
WikiGenes84804
SOURCE (Princeton)MFSD9
Genetics Home Reference (NIH)MFSD9
Genomic and cartography
GoldenPath hg38 (UCSC)MFSD9  -     chr2:102714626-102736888 -  2q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MFSD9  -     2q12.1   [Description]    (hg19-Feb_2009)
EnsemblMFSD9 - 2q12.1 [CytoView hg19]  MFSD9 - 2q12.1 [CytoView hg38]
Mapping of homologs : NCBIMFSD9 [Mapview hg19]  MFSD9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK075376 AK290589 AK296768 AK307178 BC006242
RefSeq transcript (Entrez)NM_001322080 NM_001322081 NM_032718
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MFSD9
Cluster EST : UnigeneHs.720914 [ NCBI ]
CGAP (NCI)Hs.720914
Gene ExpressionMFSD9 [ NCBI-GEO ]   MFSD9 [ EBI - ARRAY_EXPRESS ]   MFSD9 [ SEEK ]   MFSD9 [ MEM ]
Gene Expression Viewer (FireBrowse)MFSD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84804
GTEX Portal (Tissue expression)MFSD9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBP5
Splice isoforms : SwissVarQ8NBP5
PhosPhoSitePlusQ8NBP5
Domaine pattern : Prosite (Expaxy)MFS (PS50850)   
Domains : Interpro (EBI)MFS    MFS_dom    Sugar_transporter_CS    Tet-R_TetA/multi-R_MdtG   
Domain families : Pfam (Sanger)MFS_1 (PF07690)   
Domain families : Pfam (NCBI)pfam07690   
Conserved Domain (NCBI)MFSD9
DMDM Disease mutations84804
Blocks (Seattle)MFSD9
SuperfamilyQ8NBP5
Peptide AtlasQ8NBP5
HPRD14418
IPIIPI00301231   IPI00917850   IPI00917988   IPI00917055   IPI00916128   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBP5
IntAct (EBI)Q8NBP5
BioGRIDMFSD9
STRING (EMBL)MFSD9
ZODIACMFSD9
Ontologies - Pathways
QuickGOQ8NBP5
Ontology : AmiGOtransporter activity  integral component of membrane  transmembrane transport  
Ontology : EGO-EBItransporter activity  integral component of membrane  transmembrane transport  
NDEx NetworkMFSD9
Atlas of Cancer Signalling NetworkMFSD9
Wikipedia pathwaysMFSD9
Orthology - Evolution
OrthoDB84804
Phylogenetic Trees/Animal Genes : TreeFamMFSD9
HOVERGENQ8NBP5
HOGENOMQ8NBP5
Homologs : HomoloGeneMFSD9
Homology/Alignments : Family Browser (UCSC)MFSD9
Gene fusions - Rearrangements
Tumor Fusion PortalMFSD9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMFSD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MFSD9
dbVarMFSD9
ClinVarMFSD9
1000_GenomesMFSD9 
Exome Variant ServerMFSD9
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP84804
Genomic Variants (DGV)MFSD9 [DGVbeta]
DECIPHERMFSD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMFSD9 
Mutations
ICGC Data PortalMFSD9 
TCGA Data PortalMFSD9 
Broad Tumor PortalMFSD9
OASIS PortalMFSD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMFSD9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMFSD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MFSD9
DgiDB (Drug Gene Interaction Database)MFSD9
DoCM (Curated mutations)MFSD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MFSD9 (select a term)
intoGenMFSD9
Cancer3DMFSD9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMFSD9
MedgenMFSD9
Genetic Testing Registry MFSD9
NextProtQ8NBP5 [Medical]
TSGene84804
GENETestsMFSD9
Target ValidationMFSD9
Huge Navigator MFSD9 [HugePedia]
snp3D : Map Gene to Disease84804
BioCentury BCIQMFSD9
ClinGenMFSD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84804
Chemical/Pharm GKB GenePA162395873
Clinical trialMFSD9
Miscellaneous
canSAR (ICR)MFSD9 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMFSD9
EVEXMFSD9
GoPubMedMFSD9
iHOPMFSD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:05:26 CET 2017

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