Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MGAM2 (maltase-glucoamylase 2 (putative))

Identity

Other alias-
HGNC (Hugo) MGAM2
LocusID (NCBI) 93432
Atlas_Id 77049
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 142111749 and ends at 142222324 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MGAM2   28101
Cards
Entrez_Gene (NCBI)MGAM2  93432  maltase-glucoamylase 2 (putative)
Aliases
GeneCards (Weizmann)MGAM2
Ensembl hg19 (Hinxton)ENSG00000257743 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000257743 [Gene_View]  chr7:142111749-142222324 [Contig_View]  MGAM2 [Vega]
ICGC DataPortalENSG00000257743
TCGA cBioPortalMGAM2
AceView (NCBI)MGAM2
Genatlas (Paris)MGAM2
WikiGenes93432
SOURCE (Princeton)MGAM2
Genetics Home Reference (NIH)MGAM2
Genomic and cartography
GoldenPath hg38 (UCSC)MGAM2  -     chr7:142111749-142222324 +  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MGAM2  -     7q34   [Description]    (hg19-Feb_2009)
EnsemblMGAM2 - 7q34 [CytoView hg19]  MGAM2 - 7q34 [CytoView hg38]
Mapping of homologs : NCBIMGAM2 [Mapview hg19]  MGAM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000645 BC111973 BC111975
RefSeq transcript (Entrez)NM_001008748 NM_001293626
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_026640 NT_187562
Consensus coding sequences : CCDS (NCBI)MGAM2
Cluster EST : UnigeneHs.647098 [ NCBI ]
CGAP (NCI)Hs.647098
Alternative Splicing GalleryENSG00000257743
Gene ExpressionMGAM2 [ NCBI-GEO ]   MGAM2 [ EBI - ARRAY_EXPRESS ]   MGAM2 [ SEEK ]   MGAM2 [ MEM ]
Gene Expression Viewer (FireBrowse)MGAM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93432
GTEX Portal (Tissue expression)MGAM2
Human Protein AtlasENSG00000257743-MGAM2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ2M2H8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ2M2H8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ2M2H8
Splice isoforms : SwissVarQ2M2H8
Catalytic activity : Enzyme3.2.1.3 [ Enzyme-Expasy ]   3.2.1.33.2.1.3 [ IntEnz-EBI ]   3.2.1.3 [ BRENDA ]   3.2.1.3 [ KEGG ]   
PhosPhoSitePlusQ2M2H8
Domaine pattern : Prosite (Expaxy)GLYCOSYL_HYDROL_F31_1 (PS00129)    N6_MTASE (PS00092)    P_TREFOIL_2 (PS51448)   
Domains : Interpro (EBI)Gal_mutarotase_N    Gal_mutarotase_SF_dom    Glyco_hydro_31    Glyco_hydro_31_AS    Glycoside_hydrolase_SF    P_trefoil_dom   
Domain families : Pfam (Sanger)Glyco_hydro_31 (PF01055)    NtCtMGAM_N (PF16863)    Trefoil (PF00088)   
Domain families : Pfam (NCBI)pfam01055    pfam16863    pfam00088   
Domain families : Smart (EMBL)PD (SM00018)  
Conserved Domain (NCBI)MGAM2
DMDM Disease mutations93432
Blocks (Seattle)MGAM2
SuperfamilyQ2M2H8
Human Protein Atlas [tissue]ENSG00000257743-MGAM2 [tissue]
Peptide AtlasQ2M2H8
IPIIPI01024919   
Protein Interaction databases
DIP (DOE-UCLA)Q2M2H8
IntAct (EBI)Q2M2H8
FunCoupENSG00000257743
BioGRIDMGAM2
STRING (EMBL)MGAM2
ZODIACMGAM2
Ontologies - Pathways
QuickGOQ2M2H8
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMGAM2
Atlas of Cancer Signalling NetworkMGAM2
Wikipedia pathwaysMGAM2
Orthology - Evolution
OrthoDB93432
GeneTree (enSembl)ENSG00000257743
Phylogenetic Trees/Animal Genes : TreeFamMGAM2
HOVERGENQ2M2H8
HOGENOMQ2M2H8
Homologs : HomoloGeneMGAM2
Homology/Alignments : Family Browser (UCSC)MGAM2
Gene fusions - Rearrangements
Fusion: Tumor Portal MGAM2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGAM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MGAM2
dbVarMGAM2
ClinVarMGAM2
1000_GenomesMGAM2 
Exome Variant ServerMGAM2
ExAC (Exome Aggregation Consortium)ENSG00000257743
GNOMAD BrowserENSG00000257743
Genetic variants : HAPMAP93432
Genomic Variants (DGV)MGAM2 [DGVbeta]
DECIPHERMGAM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMGAM2 
Mutations
ICGC Data PortalMGAM2 
TCGA Data PortalMGAM2 
Broad Tumor PortalMGAM2
OASIS PortalMGAM2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMGAM2
BioMutasearch MGAM2
DgiDB (Drug Gene Interaction Database)MGAM2
DoCM (Curated mutations)MGAM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGAM2 (select a term)
intoGenMGAM2
Cancer3DMGAM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMGAM2
Genetic Testing Registry MGAM2
NextProtQ2M2H8 [Medical]
TSGene93432
GENETestsMGAM2
Target ValidationMGAM2
Huge Navigator MGAM2 [HugePedia]
snp3D : Map Gene to Disease93432
BioCentury BCIQMGAM2
ClinGenMGAM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93432
Clinical trialMGAM2
Miscellaneous
canSAR (ICR)MGAM2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMGAM2
EVEXMGAM2
GoPubMedMGAM2
iHOPMGAM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:12:42 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.