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MGARP (mitochondria localized glutamic acid rich protein)

Identity

Alias_namesC4orf49
chromosome 4 open reading frame 49
Alias_symbol (synonym)OSAP
CESP-1
HUMMR
Other alias
HGNC (Hugo) MGARP
LocusID (NCBI) 84709
Atlas_Id 68949
Location 4q31.1  [Link to chromosome band 4q31]
Location_base_pair Starts at 139266163 and ends at 139280338 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MGARP   29969
Cards
Entrez_Gene (NCBI)MGARP  84709  mitochondria localized glutamic acid rich protein
AliasesC4orf49; CESP-1; HUMMR; OSAP
GeneCards (Weizmann)MGARP
Ensembl hg19 (Hinxton)ENSG00000137463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137463 [Gene_View]  chr4:139266163-139280338 [Contig_View]  MGARP [Vega]
ICGC DataPortalENSG00000137463
TCGA cBioPortalMGARP
AceView (NCBI)MGARP
Genatlas (Paris)MGARP
WikiGenes84709
SOURCE (Princeton)MGARP
Genetics Home Reference (NIH)MGARP
Genomic and cartography
GoldenPath hg38 (UCSC)MGARP  -     chr4:139266163-139280338 -  4q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MGARP  -     4q31.1   [Description]    (hg19-Feb_2009)
EnsemblMGARP - 4q31.1 [CytoView hg19]  MGARP - 4q31.1 [CytoView hg38]
Mapping of homologs : NCBIMGARP [Mapview hg19]  MGARP [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF329088 AF484960 BC037987 BC104173 BC104174
RefSeq transcript (Entrez)NM_032623
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MGARP
Cluster EST : UnigeneHs.710036 [ NCBI ]
CGAP (NCI)Hs.710036
Alternative Splicing GalleryENSG00000137463
Gene ExpressionMGARP [ NCBI-GEO ]   MGARP [ EBI - ARRAY_EXPRESS ]   MGARP [ SEEK ]   MGARP [ MEM ]
Gene Expression Viewer (FireBrowse)MGARP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84709
GTEX Portal (Tissue expression)MGARP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDB4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDB4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDB4
Splice isoforms : SwissVarQ8TDB4
PhosPhoSitePlusQ8TDB4
Domains : Interpro (EBI)MGARP    MGARP_N   
Domain families : Pfam (Sanger)AIF-MLS (PF14962)   
Domain families : Pfam (NCBI)pfam14962   
Conserved Domain (NCBI)MGARP
DMDM Disease mutations84709
Blocks (Seattle)MGARP
SuperfamilyQ8TDB4
Human Protein AtlasENSG00000137463
Peptide AtlasQ8TDB4
HPRD17805
IPIIPI00013252   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDB4
IntAct (EBI)Q8TDB4
FunCoupENSG00000137463
BioGRIDMGARP
STRING (EMBL)MGARP
ZODIACMGARP
Ontologies - Pathways
QuickGOQ8TDB4
Ontology : AmiGOprotein binding  mitochondrion  protein targeting to mitochondrion  anterograde axonal transport  retrograde axonal transport  regulation of mitochondrion organization  positive regulation of mitochondrion organization  axonal transport of mitochondrion  integral component of mitochondrial outer membrane  integral component of mitochondrial outer membrane  cellular response to steroid hormone stimulus  cellular response to hypoxia  cellular response to gonadotropin-releasing hormone  axon cytoplasm  
Ontology : EGO-EBIprotein binding  mitochondrion  protein targeting to mitochondrion  anterograde axonal transport  retrograde axonal transport  regulation of mitochondrion organization  positive regulation of mitochondrion organization  axonal transport of mitochondrion  integral component of mitochondrial outer membrane  integral component of mitochondrial outer membrane  cellular response to steroid hormone stimulus  cellular response to hypoxia  cellular response to gonadotropin-releasing hormone  axon cytoplasm  
NDEx NetworkMGARP
Atlas of Cancer Signalling NetworkMGARP
Wikipedia pathwaysMGARP
Orthology - Evolution
OrthoDB84709
GeneTree (enSembl)ENSG00000137463
Phylogenetic Trees/Animal Genes : TreeFamMGARP
HOVERGENQ8TDB4
HOGENOMQ8TDB4
Homologs : HomoloGeneMGARP
Homology/Alignments : Family Browser (UCSC)MGARP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGARP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MGARP
dbVarMGARP
ClinVarMGARP
1000_GenomesMGARP 
Exome Variant ServerMGARP
ExAC (Exome Aggregation Consortium)MGARP (select the gene name)
Genetic variants : HAPMAP84709
Genomic Variants (DGV)MGARP [DGVbeta]
DECIPHERMGARP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMGARP 
Mutations
ICGC Data PortalMGARP 
TCGA Data PortalMGARP 
Broad Tumor PortalMGARP
OASIS PortalMGARP [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMGARP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MGARP
DgiDB (Drug Gene Interaction Database)MGARP
DoCM (Curated mutations)MGARP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGARP (select a term)
intoGenMGARP
Cancer3DMGARP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMGARP
Genetic Testing Registry MGARP
NextProtQ8TDB4 [Medical]
TSGene84709
GENETestsMGARP
Target ValidationMGARP
Huge Navigator MGARP [HugePedia]
snp3D : Map Gene to Disease84709
BioCentury BCIQMGARP
ClinGenMGARP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84709
Chemical/Pharm GKB GenePA164717327
Clinical trialMGARP
Miscellaneous
canSAR (ICR)MGARP (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMGARP
EVEXMGARP
GoPubMedMGARP
iHOPMGARP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:26:03 CEST 2017

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