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MGAT2 (mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase)

Identity

Alias_symbol (synonym)GNT-II
Other aliasCDG2A
CDGS2
GLCNACTII
GNT2
HGNC (Hugo) MGAT2
LocusID (NCBI) 4247
Atlas_Id 68950
Location 14q21.3  [Link to chromosome band 14q21]
Location_base_pair Starts at 49620771 and ends at 49623481 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MGAT2   7045
Cards
Entrez_Gene (NCBI)MGAT2  4247  mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyltransferase
AliasesCDG2A; CDGS2; GLCNACTII; GNT-II; 
GNT2
GeneCards (Weizmann)MGAT2
Ensembl hg19 (Hinxton)ENSG00000168282 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168282 [Gene_View]  chr14:49620771-49623481 [Contig_View]  MGAT2 [Vega]
ICGC DataPortalENSG00000168282
TCGA cBioPortalMGAT2
AceView (NCBI)MGAT2
Genatlas (Paris)MGAT2
WikiGenes4247
SOURCE (Princeton)MGAT2
Genetics Home Reference (NIH)MGAT2
Genomic and cartography
GoldenPath hg38 (UCSC)MGAT2  -     chr14:49620771-49623481 +  14q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MGAT2  -     14q21.3   [Description]    (hg19-Feb_2009)
EnsemblMGAT2 - 14q21.3 [CytoView hg19]  MGAT2 - 14q21.3 [CytoView hg38]
Mapping of homologs : NCBIMGAT2 [Mapview hg19]  MGAT2 [Mapview hg38]
OMIM212066   602616   
Gene and transcription
Genbank (Entrez)AK056167 AK075051 AK075199 AK293231 BC006390
RefSeq transcript (Entrez)NM_001015883 NM_002408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MGAT2
Cluster EST : UnigeneHs.93338 [ NCBI ]
CGAP (NCI)Hs.93338
Alternative Splicing GalleryENSG00000168282
Gene ExpressionMGAT2 [ NCBI-GEO ]   MGAT2 [ EBI - ARRAY_EXPRESS ]   MGAT2 [ SEEK ]   MGAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)MGAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4247
GTEX Portal (Tissue expression)MGAT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ10469   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ10469  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ10469
Splice isoforms : SwissVarQ10469
Catalytic activity : Enzyme2.4.1.143 [ Enzyme-Expasy ]   2.4.1.1432.4.1.143 [ IntEnz-EBI ]   2.4.1.143 [ BRENDA ]   2.4.1.143 [ KEGG ]   
PhosPhoSitePlusQ10469
Domains : Interpro (EBI)GlcNAc_II    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)MGAT2 (PF05060)   
Domain families : Pfam (NCBI)pfam05060   
Conserved Domain (NCBI)MGAT2
DMDM Disease mutations4247
Blocks (Seattle)MGAT2
SuperfamilyQ10469
Human Protein AtlasENSG00000168282
Peptide AtlasQ10469
HPRD04013
IPIIPI01010309   IPI00025809   
Protein Interaction databases
DIP (DOE-UCLA)Q10469
IntAct (EBI)Q10469
FunCoupENSG00000168282
BioGRIDMGAT2
STRING (EMBL)MGAT2
ZODIACMGAT2
Ontologies - Pathways
QuickGOQ10469
Ontology : AmiGOGolgi membrane  Golgi apparatus  Golgi stack  protein N-linked glycosylation  alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity  oligosaccharide metabolic process  oligosaccharide biosynthetic process  membrane  integral component of membrane  protein N-linked glycosylation via asparagine  carbohydrate binding  
Ontology : EGO-EBIGolgi membrane  Golgi apparatus  Golgi stack  protein N-linked glycosylation  alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity  oligosaccharide metabolic process  oligosaccharide biosynthetic process  membrane  integral component of membrane  protein N-linked glycosylation via asparagine  carbohydrate binding  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkMGAT2
Atlas of Cancer Signalling NetworkMGAT2
Wikipedia pathwaysMGAT2
Orthology - Evolution
OrthoDB4247
GeneTree (enSembl)ENSG00000168282
Phylogenetic Trees/Animal Genes : TreeFamMGAT2
HOVERGENQ10469
HOGENOMQ10469
Homologs : HomoloGeneMGAT2
Homology/Alignments : Family Browser (UCSC)MGAT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGAT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MGAT2
dbVarMGAT2
ClinVarMGAT2
1000_GenomesMGAT2 
Exome Variant ServerMGAT2
ExAC (Exome Aggregation Consortium)MGAT2 (select the gene name)
Genetic variants : HAPMAP4247
Genomic Variants (DGV)MGAT2 [DGVbeta]
DECIPHERMGAT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMGAT2 
Mutations
ICGC Data PortalMGAT2 
TCGA Data PortalMGAT2 
Broad Tumor PortalMGAT2
OASIS PortalMGAT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMGAT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMGAT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MGAT2
DgiDB (Drug Gene Interaction Database)MGAT2
DoCM (Curated mutations)MGAT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGAT2 (select a term)
intoGenMGAT2
Cancer3DMGAT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM212066    602616   
Orphanet11355   
MedgenMGAT2
Genetic Testing Registry MGAT2
NextProtQ10469 [Medical]
TSGene4247
GENETestsMGAT2
Target ValidationMGAT2
Huge Navigator MGAT2 [HugePedia]
snp3D : Map Gene to Disease4247
BioCentury BCIQMGAT2
ClinGenMGAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4247
Chemical/Pharm GKB GenePA30780
Clinical trialMGAT2
Miscellaneous
canSAR (ICR)MGAT2 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMGAT2
EVEXMGAT2
GoPubMedMGAT2
iHOPMGAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:27:19 CEST 2017

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