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MGAT3 (mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase)

Identity

Alias_symbol (synonym)GNT-III
Other aliasGNT3
HGNC (Hugo) MGAT3
LocusID (NCBI) 4248
Atlas_Id 51544
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39883229 and ends at 39888199 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MGAT3 (22q13.1) / TTC31 (2p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MGAT3   7046
Cards
Entrez_Gene (NCBI)MGAT3  4248  mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
AliasesGNT-III; GNT3
GeneCards (Weizmann)MGAT3
Ensembl hg19 (Hinxton)ENSG00000128268 [Gene_View]  chr22:39883229-39888199 [Contig_View]  MGAT3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000128268 [Gene_View]  chr22:39883229-39888199 [Contig_View]  MGAT3 [Vega]
ICGC DataPortalENSG00000128268
TCGA cBioPortalMGAT3
AceView (NCBI)MGAT3
Genatlas (Paris)MGAT3
WikiGenes4248
SOURCE (Princeton)MGAT3
Genetics Home Reference (NIH)MGAT3
Genomic and cartography
GoldenPath hg19 (UCSC)MGAT3  -     chr22:39883229-39888199 +  22q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MGAT3  -     22q13.1   [Description]    (hg38-Dec_2013)
EnsemblMGAT3 - 22q13.1 [CytoView hg19]  MGAT3 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIMGAT3 [Mapview hg19]  MGAT3 [Mapview hg38]
OMIM604621   
Gene and transcription
Genbank (Entrez)AK125361 AK313664 BC075025 BC075026 BC113383
RefSeq transcript (Entrez)NM_001098270 NM_002409
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)MGAT3
Cluster EST : UnigeneHs.276808 [ NCBI ]
CGAP (NCI)Hs.276808
Alternative Splicing GalleryENSG00000128268
Gene ExpressionMGAT3 [ NCBI-GEO ]   MGAT3 [ EBI - ARRAY_EXPRESS ]   MGAT3 [ SEEK ]   MGAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)MGAT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4248
GTEX Portal (Tissue expression)MGAT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ09327   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ09327  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ09327
Splice isoforms : SwissVarQ09327
Catalytic activity : Enzyme2.4.1.144 [ Enzyme-Expasy ]   2.4.1.1442.4.1.144 [ IntEnz-EBI ]   2.4.1.144 [ BRENDA ]   2.4.1.144 [ KEGG ]   
PhosPhoSitePlusQ09327
Domains : Interpro (EBI)Glyco_trans_17   
Domain families : Pfam (Sanger)Glyco_transf_17 (PF04724)   
Domain families : Pfam (NCBI)pfam04724   
Conserved Domain (NCBI)MGAT3
DMDM Disease mutations4248
Blocks (Seattle)MGAT3
SuperfamilyQ09327
Human Protein AtlasENSG00000128268
Peptide AtlasQ09327
HPRD07058
IPIIPI00020406   IPI00982898   IPI00880084   IPI00880029   
Protein Interaction databases
DIP (DOE-UCLA)Q09327
IntAct (EBI)Q09327
FunCoupENSG00000128268
BioGRIDMGAT3
STRING (EMBL)MGAT3
ZODIACMGAT3
Ontologies - Pathways
QuickGOQ09327
Ontology : AmiGOGolgi membrane  beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity  protein N-linked glycosylation  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity  protein N-linked glycosylation  integral component of membrane  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkMGAT3
Atlas of Cancer Signalling NetworkMGAT3
Wikipedia pathwaysMGAT3
Orthology - Evolution
OrthoDB4248
GeneTree (enSembl)ENSG00000128268
Phylogenetic Trees/Animal Genes : TreeFamMGAT3
HOVERGENQ09327
HOGENOMQ09327
Homologs : HomoloGeneMGAT3
Homology/Alignments : Family Browser (UCSC)MGAT3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGAT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MGAT3
dbVarMGAT3
ClinVarMGAT3
1000_GenomesMGAT3 
Exome Variant ServerMGAT3
ExAC (Exome Aggregation Consortium)MGAT3 (select the gene name)
Genetic variants : HAPMAP4248
Genomic Variants (DGV)MGAT3 [DGVbeta]
DECIPHER (Syndromes)22:39883229-39888199  ENSG00000128268
CONAN: Copy Number AnalysisMGAT3 
Mutations
ICGC Data PortalMGAT3 
TCGA Data PortalMGAT3 
Broad Tumor PortalMGAT3
OASIS PortalMGAT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMGAT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMGAT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MGAT3
DgiDB (Drug Gene Interaction Database)MGAT3
DoCM (Curated mutations)MGAT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGAT3 (select a term)
intoGenMGAT3
Cancer3DMGAT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604621   
Orphanet
MedgenMGAT3
Genetic Testing Registry MGAT3
NextProtQ09327 [Medical]
TSGene4248
GENETestsMGAT3
Huge Navigator MGAT3 [HugePedia]
snp3D : Map Gene to Disease4248
BioCentury BCIQMGAT3
ClinGenMGAT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4248
Chemical/Pharm GKB GenePA30781
Clinical trialMGAT3
Miscellaneous
canSAR (ICR)MGAT3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMGAT3
EVEXMGAT3
GoPubMedMGAT3
iHOPMGAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:15:05 CET 2017

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