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MGAT4B (mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B)

Identity

Alias_namesmannosyl (alpha-1
Alias_symbol (synonym)GnT-Ivb
Other aliasGNT-IV
GNT-IVB
HGNC (Hugo) MGAT4B
LocusID (NCBI) 11282
Atlas_Id 45990
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179224598 and ends at 179233952 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MALAT1 (11q13.1) / MGAT4B (5q35.3)MGAT4B (5q35.3) / MGAT4B (5q35.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MGAT4B   7048
Cards
Entrez_Gene (NCBI)MGAT4B  11282  mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B
AliasesGNT-IV; GNT-IVB
GeneCards (Weizmann)MGAT4B
Ensembl hg19 (Hinxton)ENSG00000161013 [Gene_View]  chr5:179224598-179233952 [Contig_View]  MGAT4B [Vega]
Ensembl hg38 (Hinxton)ENSG00000161013 [Gene_View]  chr5:179224598-179233952 [Contig_View]  MGAT4B [Vega]
ICGC DataPortalENSG00000161013
TCGA cBioPortalMGAT4B
AceView (NCBI)MGAT4B
Genatlas (Paris)MGAT4B
WikiGenes11282
SOURCE (Princeton)MGAT4B
Genetics Home Reference (NIH)MGAT4B
Genomic and cartography
GoldenPath hg19 (UCSC)MGAT4B  -     chr5:179224598-179233952 -  5q35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MGAT4B  -     5q35.3   [Description]    (hg38-Dec_2013)
EnsemblMGAT4B - 5q35.3 [CytoView hg19]  MGAT4B - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIMGAT4B [Mapview hg19]  MGAT4B [Mapview hg38]
OMIM604561   
Gene and transcription
Genbank (Entrez)AB000624 AK023137 AK225490 AK225492 AL162067
RefSeq transcript (Entrez)NM_014275 NM_054013
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)MGAT4B
Cluster EST : UnigeneHs.567419 [ NCBI ]
CGAP (NCI)Hs.567419
Alternative Splicing GalleryENSG00000161013
Gene ExpressionMGAT4B [ NCBI-GEO ]   MGAT4B [ EBI - ARRAY_EXPRESS ]   MGAT4B [ SEEK ]   MGAT4B [ MEM ]
Gene Expression Viewer (FireBrowse)MGAT4B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)11282
GTEX Portal (Tissue expression)MGAT4B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UQ53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UQ53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UQ53
Splice isoforms : SwissVarQ9UQ53
Catalytic activity : Enzyme2.4.1.145 [ Enzyme-Expasy ]   2.4.1.1452.4.1.145 [ IntEnz-EBI ]   2.4.1.145 [ BRENDA ]   2.4.1.145 [ KEGG ]   
PhosPhoSitePlusQ9UQ53
Domains : Interpro (EBI)Glyco_transf_54   
Domain families : Pfam (Sanger)Glyco_transf_54 (PF04666)   
Domain families : Pfam (NCBI)pfam04666   
Conserved Domain (NCBI)MGAT4B
DMDM Disease mutations11282
Blocks (Seattle)MGAT4B
SuperfamilyQ9UQ53
Human Protein AtlasENSG00000161013
Peptide AtlasQ9UQ53
HPRD05190
IPIIPI00477905   IPI00847221   IPI00744230   IPI00981289   IPI00983273   IPI00982926   IPI00984954   IPI00978550   IPI00982251   IPI00983956   IPI00980652   
Protein Interaction databases
DIP (DOE-UCLA)Q9UQ53
IntAct (EBI)Q9UQ53
FunCoupENSG00000161013
BioGRIDMGAT4B
STRING (EMBL)MGAT4B
ZODIACMGAT4B
Ontologies - Pathways
QuickGOQ9UQ53
Ontology : AmiGOGolgi membrane  N-glycan processing  alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity  integral component of membrane  metal ion binding  
Ontology : EGO-EBIGolgi membrane  N-glycan processing  alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity  integral component of membrane  metal ion binding  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkMGAT4B
Atlas of Cancer Signalling NetworkMGAT4B
Wikipedia pathwaysMGAT4B
Orthology - Evolution
OrthoDB11282
GeneTree (enSembl)ENSG00000161013
Phylogenetic Trees/Animal Genes : TreeFamMGAT4B
HOVERGENQ9UQ53
HOGENOMQ9UQ53
Homologs : HomoloGeneMGAT4B
Homology/Alignments : Family Browser (UCSC)MGAT4B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGAT4B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MGAT4B
dbVarMGAT4B
ClinVarMGAT4B
1000_GenomesMGAT4B 
Exome Variant ServerMGAT4B
ExAC (Exome Aggregation Consortium)MGAT4B (select the gene name)
Genetic variants : HAPMAP11282
Genomic Variants (DGV)MGAT4B [DGVbeta]
DECIPHER (Syndromes)5:179224598-179233952  ENSG00000161013
CONAN: Copy Number AnalysisMGAT4B 
Mutations
ICGC Data PortalMGAT4B 
TCGA Data PortalMGAT4B 
Broad Tumor PortalMGAT4B
OASIS PortalMGAT4B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMGAT4B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMGAT4B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MGAT4B
DgiDB (Drug Gene Interaction Database)MGAT4B
DoCM (Curated mutations)MGAT4B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGAT4B (select a term)
intoGenMGAT4B
Cancer3DMGAT4B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604561   
Orphanet
MedgenMGAT4B
Genetic Testing Registry MGAT4B
NextProtQ9UQ53 [Medical]
TSGene11282
GENETestsMGAT4B
Huge Navigator MGAT4B [HugePedia]
snp3D : Map Gene to Disease11282
BioCentury BCIQMGAT4B
ClinGenMGAT4B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD11282
Chemical/Pharm GKB GenePA30783
Clinical trialMGAT4B
Miscellaneous
canSAR (ICR)MGAT4B (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMGAT4B
EVEXMGAT4B
GoPubMedMGAT4B
iHOPMGAT4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:09:05 CEST 2017

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