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MGAT4C (MGAT4 family member C)

Identity

Alias_namesmannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
MGAT4 family, member C
Alias_symbol (synonym)HGNT-IV-H
Other aliasGNTIVH
HGNC (Hugo) MGAT4C
LocusID (NCBI) 25834
Atlas_Id 54453
Location 12q21.31  [Link to chromosome band 12q21]
Location_base_pair Starts at 85979259 and ends at 86838904 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
LDLRAD2 (1p36.12) / MGAT4C (12q21.31)LOC151009 () / MGAT4C (12q21.31)MGAT4C (12q21.31) / GRM4 (6p21.31)
MGAT4C (12q21.31) / LOC400655 (18q22.3)MGAT4C (12q21.31) / PLD1 (3q26.31)PPP1R12A (12q21.2) / MGAT4C (12q21.31)
MGAT4C 12q21.31 / PLD1 3q26.31PPP1R12A 12q21.2 / MGAT4C 12q21.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MGAT4C   30871
Cards
Entrez_Gene (NCBI)MGAT4C  25834  MGAT4 family member C
AliasesGNTIVH; HGNT-IV-H
GeneCards (Weizmann)MGAT4C
Ensembl hg19 (Hinxton)ENSG00000182050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182050 [Gene_View]  chr12:85979259-86838904 [Contig_View]  MGAT4C [Vega]
ICGC DataPortalENSG00000182050
TCGA cBioPortalMGAT4C
AceView (NCBI)MGAT4C
Genatlas (Paris)MGAT4C
WikiGenes25834
SOURCE (Princeton)MGAT4C
Genetics Home Reference (NIH)MGAT4C
Genomic and cartography
GoldenPath hg38 (UCSC)MGAT4C  -     chr12:85979259-86838904 -  12q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MGAT4C  -     12q21.31   [Description]    (hg19-Feb_2009)
EnsemblMGAT4C - 12q21.31 [CytoView hg19]  MGAT4C - 12q21.31 [CytoView hg38]
Mapping of homologs : NCBIMGAT4C [Mapview hg19]  MGAT4C [Mapview hg38]
OMIM607385   
Gene and transcription
Genbank (Entrez)AK127727 AK299253 BC026068 BC035851 BC064141
RefSeq transcript (Entrez)NM_013244
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MGAT4C
Cluster EST : UnigeneHs.589093 [ NCBI ]
CGAP (NCI)Hs.589093
Alternative Splicing GalleryENSG00000182050
Gene ExpressionMGAT4C [ NCBI-GEO ]   MGAT4C [ EBI - ARRAY_EXPRESS ]   MGAT4C [ SEEK ]   MGAT4C [ MEM ]
Gene Expression Viewer (FireBrowse)MGAT4C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25834
GTEX Portal (Tissue expression)MGAT4C
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBM8
Splice isoforms : SwissVarQ9UBM8
Catalytic activity : Enzyme2.4.1.145 [ Enzyme-Expasy ]   2.4.1.1452.4.1.145 [ IntEnz-EBI ]   2.4.1.145 [ BRENDA ]   2.4.1.145 [ KEGG ]   
PhosPhoSitePlusQ9UBM8
Domains : Interpro (EBI)Glyco_transf_54   
Domain families : Pfam (Sanger)Glyco_transf_54 (PF04666)   
Domain families : Pfam (NCBI)pfam04666   
Conserved Domain (NCBI)MGAT4C
DMDM Disease mutations25834
Blocks (Seattle)MGAT4C
SuperfamilyQ9UBM8
Human Protein AtlasENSG00000182050
Peptide AtlasQ9UBM8
HPRD09575
IPIIPI00939814   IPI00796220   IPI01021209   IPI01022850   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBM8
IntAct (EBI)Q9UBM8
FunCoupENSG00000182050
BioGRIDMGAT4C
STRING (EMBL)MGAT4C
ZODIACMGAT4C
Ontologies - Pathways
QuickGOQ9UBM8
Ontology : AmiGOGolgi membrane  carbohydrate metabolic process  protein glycosylation  alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity  integral component of membrane  metal ion binding  
Ontology : EGO-EBIGolgi membrane  carbohydrate metabolic process  protein glycosylation  alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity  integral component of membrane  metal ion binding  
Pathways : KEGGN-Glycan biosynthesis   
NDEx NetworkMGAT4C
Atlas of Cancer Signalling NetworkMGAT4C
Wikipedia pathwaysMGAT4C
Orthology - Evolution
OrthoDB25834
GeneTree (enSembl)ENSG00000182050
Phylogenetic Trees/Animal Genes : TreeFamMGAT4C
HOVERGENQ9UBM8
HOGENOMQ9UBM8
Homologs : HomoloGeneMGAT4C
Homology/Alignments : Family Browser (UCSC)MGAT4C
Gene fusions - Rearrangements
Fusion : MitelmanMGAT4C/PLD1 [12q21.31/3q26.31]  
Fusion : MitelmanPPP1R12A/MGAT4C [12q21.2/12q21.31]  [t(12;12)(q21;q21)]  
Fusion: TCGAMGAT4C 12q21.31 PLD1 3q26.31 LUSC
Fusion: TCGAPPP1R12A 12q21.2 MGAT4C 12q21.31 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGAT4C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MGAT4C
dbVarMGAT4C
ClinVarMGAT4C
1000_GenomesMGAT4C 
Exome Variant ServerMGAT4C
ExAC (Exome Aggregation Consortium)MGAT4C (select the gene name)
Genetic variants : HAPMAP25834
Genomic Variants (DGV)MGAT4C [DGVbeta]
DECIPHERMGAT4C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMGAT4C 
Mutations
ICGC Data PortalMGAT4C 
TCGA Data PortalMGAT4C 
Broad Tumor PortalMGAT4C
OASIS PortalMGAT4C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMGAT4C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMGAT4C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MGAT4C
DgiDB (Drug Gene Interaction Database)MGAT4C
DoCM (Curated mutations)MGAT4C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGAT4C (select a term)
intoGenMGAT4C
Cancer3DMGAT4C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607385   
Orphanet
MedgenMGAT4C
Genetic Testing Registry MGAT4C
NextProtQ9UBM8 [Medical]
TSGene25834
GENETestsMGAT4C
Target ValidationMGAT4C
Huge Navigator MGAT4C [HugePedia]
snp3D : Map Gene to Disease25834
BioCentury BCIQMGAT4C
ClinGenMGAT4C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25834
Chemical/Pharm GKB GenePA143485535
Clinical trialMGAT4C
Miscellaneous
canSAR (ICR)MGAT4C (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMGAT4C
EVEXMGAT4C
GoPubMedMGAT4C
iHOPMGAT4C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:42:55 CEST 2017

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