Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MGAT4D (MGAT4 family member D)

Identity

Alias_namesMGAT4 family, member D
Alias_symbol (synonym)GnT1IP
Other alias
HGNC (Hugo) MGAT4D
LocusID (NCBI) 152586
Atlas_Id 68951
Location 4q31.1  [Link to chromosome band 4q31]
Location_base_pair Starts at 140443375 and ends at 140498377 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MGAT4D   43619
Cards
Entrez_Gene (NCBI)MGAT4D  152586  MGAT4 family member D
AliasesGnT1IP
GeneCards (Weizmann)MGAT4D
Ensembl hg19 (Hinxton)ENSG00000205301 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205301 [Gene_View]  chr4:140443375-140498377 [Contig_View]  MGAT4D [Vega]
ICGC DataPortalENSG00000205301
TCGA cBioPortalMGAT4D
AceView (NCBI)MGAT4D
Genatlas (Paris)MGAT4D
WikiGenes152586
SOURCE (Princeton)MGAT4D
Genetics Home Reference (NIH)MGAT4D
Genomic and cartography
GoldenPath hg38 (UCSC)MGAT4D  -     chr4:140443375-140498377 -  4q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MGAT4D  -     4q31.1   [Description]    (hg19-Feb_2009)
EnsemblMGAT4D - 4q31.1 [CytoView hg19]  MGAT4D - 4q31.1 [CytoView hg38]
Mapping of homologs : NCBIMGAT4D [Mapview hg19]  MGAT4D [Mapview hg38]
OMIM610310   
Gene and transcription
Genbank (Entrez)BC041818 BI826002 BI828214 DB444046 DB462368
RefSeq transcript (Entrez)NM_001034840 NM_001277353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MGAT4D
Cluster EST : UnigeneHs.189067 [ NCBI ]
CGAP (NCI)Hs.189067
Alternative Splicing GalleryENSG00000205301
Gene ExpressionMGAT4D [ NCBI-GEO ]   MGAT4D [ EBI - ARRAY_EXPRESS ]   MGAT4D [ SEEK ]   MGAT4D [ MEM ]
Gene Expression Viewer (FireBrowse)MGAT4D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152586
GTEX Portal (Tissue expression)MGAT4D
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NG13   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NG13  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NG13
Splice isoforms : SwissVarA6NG13
PhosPhoSitePlusA6NG13
Domains : Interpro (EBI)Glyco_transf_54   
Domain families : Pfam (Sanger)Glyco_transf_54 (PF04666)   
Domain families : Pfam (NCBI)pfam04666   
Conserved Domain (NCBI)MGAT4D
DMDM Disease mutations152586
Blocks (Seattle)MGAT4D
SuperfamilyA6NG13
Human Protein AtlasENSG00000205301
Peptide AtlasA6NG13
HPRD18736
IPIIPI00738944   IPI00964216   IPI00967508   IPI00964750   IPI00967235   IPI00963942   
Protein Interaction databases
DIP (DOE-UCLA)A6NG13
IntAct (EBI)A6NG13
FunCoupENSG00000205301
BioGRIDMGAT4D
STRING (EMBL)MGAT4D
ZODIACMGAT4D
Ontologies - Pathways
QuickGOA6NG13
Ontology : AmiGOextracellular region  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi stack  carbohydrate metabolic process  membrane  transferase activity, transferring hexosyl groups  negative regulation of protein glycosylation  
Ontology : EGO-EBIextracellular region  endoplasmic reticulum  endoplasmic reticulum-Golgi intermediate compartment  Golgi stack  carbohydrate metabolic process  membrane  transferase activity, transferring hexosyl groups  negative regulation of protein glycosylation  
NDEx NetworkMGAT4D
Atlas of Cancer Signalling NetworkMGAT4D
Wikipedia pathwaysMGAT4D
Orthology - Evolution
OrthoDB152586
GeneTree (enSembl)ENSG00000205301
Phylogenetic Trees/Animal Genes : TreeFamMGAT4D
HOVERGENA6NG13
HOGENOMA6NG13
Homologs : HomoloGeneMGAT4D
Homology/Alignments : Family Browser (UCSC)MGAT4D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGAT4D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MGAT4D
dbVarMGAT4D
ClinVarMGAT4D
1000_GenomesMGAT4D 
Exome Variant ServerMGAT4D
ExAC (Exome Aggregation Consortium)MGAT4D (select the gene name)
Genetic variants : HAPMAP152586
Genomic Variants (DGV)MGAT4D [DGVbeta]
DECIPHERMGAT4D [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMGAT4D 
Mutations
ICGC Data PortalMGAT4D 
TCGA Data PortalMGAT4D 
Broad Tumor PortalMGAT4D
OASIS PortalMGAT4D [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMGAT4D
BioMutasearch MGAT4D
DgiDB (Drug Gene Interaction Database)MGAT4D
DoCM (Curated mutations)MGAT4D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGAT4D (select a term)
intoGenMGAT4D
Cancer3DMGAT4D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610310   
Orphanet
MedgenMGAT4D
Genetic Testing Registry MGAT4D
NextProtA6NG13 [Medical]
TSGene152586
GENETestsMGAT4D
Target ValidationMGAT4D
Huge Navigator MGAT4D [HugePedia]
snp3D : Map Gene to Disease152586
BioCentury BCIQMGAT4D
ClinGenMGAT4D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152586
Chemical/Pharm GKB GenePA166123703
Clinical trialMGAT4D
Miscellaneous
canSAR (ICR)MGAT4D (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMGAT4D
EVEXMGAT4D
GoPubMedMGAT4D
iHOPMGAT4D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:26:04 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.