Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MGAT5B (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B)

Identity

Alias (NCBI)GnT-IX
GnT-VB
HGNC (Hugo) MGAT5B
HGNC Alias symbGnT-IX
FLJ25132
GnT-VB
HGNC Previous namemannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl-glucosaminyltransferase, isozyme B
LocusID (NCBI) 146664
Atlas_Id 43684
Location 17q25.2  [Link to chromosome band 17q25]
Location_base_pair Starts at 76872647 and ends at 76950389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MGAT5B (17q25.2) / VMP1 (17q23.1)MGAT5B (17q25.2) / ZNF358 (19p13.2)MGAT5B 17q25.2 / VMP1 17q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(17;17)(q23;q25) MGAT5B/VMP1

External links

Nomenclature
HGNC (Hugo)MGAT5B   24140
Cards
Entrez_Gene (NCBI)MGAT5B    alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B
AliasesGnT-IX; GnT-VB
GeneCards (Weizmann)MGAT5B
Ensembl hg19 (Hinxton)ENSG00000167889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167889 [Gene_View]  ENSG00000167889 [Sequence]  chr17:76872647-76950389 [Contig_View]  MGAT5B [Vega]
ICGC DataPortalENSG00000167889
TCGA cBioPortalMGAT5B
AceView (NCBI)MGAT5B
Genatlas (Paris)MGAT5B
SOURCE (Princeton)MGAT5B
Genetics Home Reference (NIH)MGAT5B
Genomic and cartography
GoldenPath hg38 (UCSC)MGAT5B  -     chr17:76872647-76950389 +  17q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MGAT5B  -     17q25.2   [Description]    (hg19-Feb_2009)
GoldenPathMGAT5B - 17q25.2 [CytoView hg19]  MGAT5B - 17q25.2 [CytoView hg38]
ImmunoBaseENSG00000167889
genome Data Viewer NCBIMGAT5B [Mapview hg19]  
OMIM612441   
Gene and transcription
Genbank (Entrez)AB109185 AB114297 AB235153 AK123189 AW191036
RefSeq transcript (Entrez)NM_001199172 NM_144677 NM_198955
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MGAT5B
Alternative Splicing GalleryENSG00000167889
Gene ExpressionMGAT5B [ NCBI-GEO ]   MGAT5B [ EBI - ARRAY_EXPRESS ]   MGAT5B [ SEEK ]   MGAT5B [ MEM ]
Gene Expression Viewer (FireBrowse)MGAT5B [ Firebrowse - Broad ]
GenevisibleExpression of MGAT5B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146664
GTEX Portal (Tissue expression)MGAT5B
Human Protein AtlasENSG00000167889-MGAT5B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3V5L5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3V5L5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3V5L5
Splice isoforms : SwissVarQ3V5L5
PhosPhoSitePlusQ3V5L5
Domains : Interpro (EBI)GlyclTrfase_18   
Domain families : Pfam (Sanger)Glyco_transf_18 (PF15024)   
Domain families : Pfam (NCBI)pfam15024   
Conserved Domain (NCBI)MGAT5B
Blocks (Seattle)MGAT5B
SuperfamilyQ3V5L5
Human Protein Atlas [tissue]ENSG00000167889-MGAT5B [tissue]
Peptide AtlasQ3V5L5
HPRD14392
IPIIPI00848338   IPI00940587   IPI00441187   IPI00440497   IPI00746336   
Protein Interaction databases
DIP (DOE-UCLA)Q3V5L5
IntAct (EBI)Q3V5L5
BioGRIDMGAT5B
STRING (EMBL)MGAT5B
ZODIACMGAT5B
Ontologies - Pathways
QuickGOQ3V5L5
Ontology : AmiGOGolgi membrane  protein binding  Golgi apparatus  protein N-linked glycosylation  integral component of membrane  protein O-linked glycosylation via serine  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity  manganese ion binding  
Ontology : EGO-EBIGolgi membrane  protein binding  Golgi apparatus  protein N-linked glycosylation  integral component of membrane  protein O-linked glycosylation via serine  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity  manganese ion binding  
Pathways : KEGGN-Glycan biosynthesis    Other types of O-glycan biosynthesis   
NDEx NetworkMGAT5B
Atlas of Cancer Signalling NetworkMGAT5B
Wikipedia pathwaysMGAT5B
Orthology - Evolution
OrthoDB146664
GeneTree (enSembl)ENSG00000167889
Phylogenetic Trees/Animal Genes : TreeFamMGAT5B
HOGENOMQ3V5L5
Homologs : HomoloGeneMGAT5B
Homology/Alignments : Family Browser (UCSC)MGAT5B
Gene fusions - Rearrangements
Fusion : MitelmanMGAT5B/VMP1 [17q25.2/17q23.1]  
Fusion PortalMGAT5B 17q25.2 VMP1 17q23.1 KIRC
Fusion : QuiverMGAT5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMGAT5B [hg38]
dbVarMGAT5B
ClinVarMGAT5B
MonarchMGAT5B
1000_GenomesMGAT5B 
Exome Variant ServerMGAT5B
GNOMAD BrowserENSG00000167889
Varsome BrowserMGAT5B
Genomic Variants (DGV)MGAT5B [DGVbeta]
DECIPHERMGAT5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMGAT5B 
Mutations
ICGC Data PortalMGAT5B 
TCGA Data PortalMGAT5B 
Broad Tumor PortalMGAT5B
OASIS PortalMGAT5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMGAT5B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMGAT5B
Mutations and Diseases : HGMDMGAT5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MGAT5B
DgiDB (Drug Gene Interaction Database)MGAT5B
DoCM (Curated mutations)MGAT5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MGAT5B (select a term)
intoGenMGAT5B
Cancer3DMGAT5B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612441   
Orphanet
DisGeNETMGAT5B
MedgenMGAT5B
Genetic Testing Registry MGAT5B
NextProtQ3V5L5 [Medical]
GENETestsMGAT5B
Target ValidationMGAT5B
Huge Navigator MGAT5B [HugePedia]
ClinGenMGAT5B
Clinical trials, drugs, therapy
MyCancerGenomeMGAT5B
Protein Interactions : CTD
Pharm GKB GenePA134987427
PharosQ3V5L5
Clinical trialMGAT5B
Miscellaneous
canSAR (ICR)MGAT5B (select the gene name)
HarmonizomeMGAT5B
DataMed IndexMGAT5B
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMGAT5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:24:44 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.