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MICALL1 (MICAL like 1)

Identity

Alias_namesMICAL-like 1
Alias_symbol (synonym)MIRAB13
KIAA1668
MICAL-L1
Other alias
HGNC (Hugo) MICALL1
LocusID (NCBI) 85377
Atlas_Id 54456
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 38302155 and ends at 38338465 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MICALL1 (22q13.1) / EIF3L (22q13.1)MICALL1 (22q13.1) / IFT122 (3q21.3)MICALL1 (22q13.1) / MICALL1 (22q13.1)
MICALL1 (22q13.1) / POLR2F (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MICALL1   29804
Cards
Entrez_Gene (NCBI)MICALL1  85377  MICAL like 1
AliasesMICAL-L1; MIRAB13
GeneCards (Weizmann)MICALL1
Ensembl hg19 (Hinxton)ENSG00000100139 [Gene_View]  chr22:38302155-38338465 [Contig_View]  MICALL1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100139 [Gene_View]  chr22:38302155-38338465 [Contig_View]  MICALL1 [Vega]
ICGC DataPortalENSG00000100139
TCGA cBioPortalMICALL1
AceView (NCBI)MICALL1
Genatlas (Paris)MICALL1
WikiGenes85377
SOURCE (Princeton)MICALL1
Genetics Home Reference (NIH)MICALL1
Genomic and cartography
GoldenPath hg19 (UCSC)MICALL1  -     chr22:38302155-38338465 +  22q13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MICALL1  -     22q13.1   [Description]    (hg38-Dec_2013)
EnsemblMICALL1 - 22q13.1 [CytoView hg19]  MICALL1 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBIMICALL1 [Mapview hg19]  MICALL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB051455 AJ496196 AK056603 AK127819 AL833860
RefSeq transcript (Entrez)NM_033386
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)MICALL1
Cluster EST : UnigeneHs.517610 [ NCBI ]
CGAP (NCI)Hs.517610
Alternative Splicing GalleryENSG00000100139
Gene ExpressionMICALL1 [ NCBI-GEO ]   MICALL1 [ EBI - ARRAY_EXPRESS ]   MICALL1 [ SEEK ]   MICALL1 [ MEM ]
Gene Expression Viewer (FireBrowse)MICALL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85377
GTEX Portal (Tissue expression)MICALL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N3F8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N3F8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N3F8
Splice isoforms : SwissVarQ8N3F8
PhosPhoSitePlusQ8N3F8
Domaine pattern : Prosite (Expaxy)CH (PS50021)    LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)CH-domain    DUF3585    MICAL-L1    Znf_LIM   
Domain families : Pfam (Sanger)CH (PF00307)    DUF3585 (PF12130)    LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00307    pfam12130    pfam00412   
Domain families : Smart (EMBL)CH (SM00033)  LIM (SM00132)  
Conserved Domain (NCBI)MICALL1
DMDM Disease mutations85377
Blocks (Seattle)MICALL1
PDB (SRS)2KSP   
PDB (PDBSum)2KSP   
PDB (IMB)2KSP   
PDB (RSDB)2KSP   
Structural Biology KnowledgeBase2KSP   
SCOP (Structural Classification of Proteins)2KSP   
CATH (Classification of proteins structures)2KSP   
SuperfamilyQ8N3F8
Human Protein AtlasENSG00000100139
Peptide AtlasQ8N3F8
HPRD11363
IPIIPI00174962   IPI00877794   IPI00878263   IPI00878088   IPI00878579   
Protein Interaction databases
DIP (DOE-UCLA)Q8N3F8
IntAct (EBI)Q8N3F8
FunCoupENSG00000100139
BioGRIDMICALL1
STRING (EMBL)MICALL1
ZODIACMICALL1
Ontologies - Pathways
QuickGOQ8N3F8
Ontology : AmiGOprotein binding  early endosome  late endosome  trans-Golgi network  protein targeting to membrane  endocytosis  receptor-mediated endocytosis  zinc ion binding  Rab GTPase binding  extrinsic component of membrane  neuron projection development  late endosome membrane  slow endocytic recycling  protein localization to endosome  identical protein binding  recycling endosome membrane  recycling endosome membrane  phosphatidic acid binding  membrane tubulation  cellular response to nerve growth factor stimulus  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBIprotein binding  early endosome  late endosome  trans-Golgi network  protein targeting to membrane  endocytosis  receptor-mediated endocytosis  zinc ion binding  Rab GTPase binding  extrinsic component of membrane  neuron projection development  late endosome membrane  slow endocytic recycling  protein localization to endosome  identical protein binding  recycling endosome membrane  recycling endosome membrane  phosphatidic acid binding  membrane tubulation  cellular response to nerve growth factor stimulus  retrograde transport, endosome to plasma membrane  
NDEx NetworkMICALL1
Atlas of Cancer Signalling NetworkMICALL1
Wikipedia pathwaysMICALL1
Orthology - Evolution
OrthoDB85377
GeneTree (enSembl)ENSG00000100139
Phylogenetic Trees/Animal Genes : TreeFamMICALL1
HOVERGENQ8N3F8
HOGENOMQ8N3F8
Homologs : HomoloGeneMICALL1
Homology/Alignments : Family Browser (UCSC)MICALL1
Gene fusions - Rearrangements
Fusion : MitelmanMICALL1/IFT122 [22q13.1/3q21.3]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMICALL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MICALL1
dbVarMICALL1
ClinVarMICALL1
1000_GenomesMICALL1 
Exome Variant ServerMICALL1
ExAC (Exome Aggregation Consortium)MICALL1 (select the gene name)
Genetic variants : HAPMAP85377
Genomic Variants (DGV)MICALL1 [DGVbeta]
DECIPHER (Syndromes)22:38302155-38338465  ENSG00000100139
CONAN: Copy Number AnalysisMICALL1 
Mutations
ICGC Data PortalMICALL1 
TCGA Data PortalMICALL1 
Broad Tumor PortalMICALL1
OASIS PortalMICALL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMICALL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMICALL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MICALL1
DgiDB (Drug Gene Interaction Database)MICALL1
DoCM (Curated mutations)MICALL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MICALL1 (select a term)
intoGenMICALL1
Cancer3DMICALL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMICALL1
Genetic Testing Registry MICALL1
NextProtQ8N3F8 [Medical]
TSGene85377
GENETestsMICALL1
Huge Navigator MICALL1 [HugePedia]
snp3D : Map Gene to Disease85377
BioCentury BCIQMICALL1
ClinGenMICALL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85377
Chemical/Pharm GKB GenePA162395891
Clinical trialMICALL1
Miscellaneous
canSAR (ICR)MICALL1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMICALL1
EVEXMICALL1
GoPubMedMICALL1
iHOPMICALL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:15:11 CET 2017

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