Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MICALL2 (MICAL like 2)

Identity

Alias_symbol (synonym)MGC46023
FLJ23471
MICAL-L2
JRAB
Other alias
HGNC (Hugo) MICALL2
LocusID (NCBI) 79778
Atlas_Id 55340
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 1434359 and ends at 1459473 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C7orf50 (7p22.3) / MICALL2 (7p22.3)FBXO41 (2p13.2) / MICALL2 (7p22.3)MICALL2 (7p22.3) / CCL17 (16q21)
MICALL2 (7p22.3) / KIF22 (16p11.2)MICALL2 (7p22.3) / SDK1 (7p22.2)MICALL2 7p22.3 / SDK1 7p22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MICALL2   29672
Cards
Entrez_Gene (NCBI)MICALL2  79778  MICAL like 2
AliasesJRAB; MICAL-L2
GeneCards (Weizmann)MICALL2
Ensembl hg19 (Hinxton)ENSG00000164877 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164877 [Gene_View]  chr7:1434359-1459473 [Contig_View]  MICALL2 [Vega]
ICGC DataPortalENSG00000164877
TCGA cBioPortalMICALL2
AceView (NCBI)MICALL2
Genatlas (Paris)MICALL2
WikiGenes79778
SOURCE (Princeton)MICALL2
Genetics Home Reference (NIH)MICALL2
Genomic and cartography
GoldenPath hg38 (UCSC)MICALL2  -     chr7:1434359-1459473 -  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MICALL2  -     7p22.3   [Description]    (hg19-Feb_2009)
EnsemblMICALL2 - 7p22.3 [CytoView hg19]  MICALL2 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBIMICALL2 [Mapview hg19]  MICALL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK027124 AK074068 AK091986 AK093249 AK123990
RefSeq transcript (Entrez)NM_024723 NM_182924
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MICALL2
Cluster EST : UnigeneHs.663699 [ NCBI ]
CGAP (NCI)Hs.663699
Alternative Splicing GalleryENSG00000164877
Gene ExpressionMICALL2 [ NCBI-GEO ]   MICALL2 [ EBI - ARRAY_EXPRESS ]   MICALL2 [ SEEK ]   MICALL2 [ MEM ]
Gene Expression Viewer (FireBrowse)MICALL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79778
GTEX Portal (Tissue expression)MICALL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IY33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IY33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IY33
Splice isoforms : SwissVarQ8IY33
PhosPhoSitePlusQ8IY33
Domaine pattern : Prosite (Expaxy)CH (PS50021)    LIM_DOMAIN_1 (PS00478)    LIM_DOMAIN_2 (PS50023)   
Domains : Interpro (EBI)CH-domain    DUF3585    Znf_LIM   
Domain families : Pfam (Sanger)CH (PF00307)    DUF3585 (PF12130)    LIM (PF00412)   
Domain families : Pfam (NCBI)pfam00307    pfam12130    pfam00412   
Domain families : Smart (EMBL)CH (SM00033)  LIM (SM00132)  
Conserved Domain (NCBI)MICALL2
DMDM Disease mutations79778
Blocks (Seattle)MICALL2
SuperfamilyQ8IY33
Human Protein AtlasENSG00000164877
Peptide AtlasQ8IY33
HPRD11364
IPIIPI00217622   IPI00410370   IPI00410371   IPI00003057   IPI00410369   IPI00894435   IPI00432297   IPI00982479   
Protein Interaction databases
DIP (DOE-UCLA)Q8IY33
IntAct (EBI)Q8IY33
FunCoupENSG00000164877
BioGRIDMICALL2
STRING (EMBL)MICALL2
ZODIACMICALL2
Ontologies - Pathways
QuickGOQ8IY33
Ontology : AmiGOstress fiber  protein binding  cytosol  plasma membrane  cell-cell junction  bicellular tight junction  zinc ion binding  Rab GTPase binding  actin filament polymerization  filamin binding  neuron projection development  actin cytoskeleton reorganization  actin filament bundle  endocytic recycling  substrate adhesion-dependent cell spreading  actinin binding  neuron projection  actin filament binding  recycling endosome  bicellular tight junction assembly  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIstress fiber  protein binding  cytosol  plasma membrane  cell-cell junction  bicellular tight junction  zinc ion binding  Rab GTPase binding  actin filament polymerization  filamin binding  neuron projection development  actin cytoskeleton reorganization  actin filament bundle  endocytic recycling  substrate adhesion-dependent cell spreading  actinin binding  neuron projection  actin filament binding  recycling endosome  bicellular tight junction assembly  positive regulation of protein targeting to mitochondrion  
NDEx NetworkMICALL2
Atlas of Cancer Signalling NetworkMICALL2
Wikipedia pathwaysMICALL2
Orthology - Evolution
OrthoDB79778
GeneTree (enSembl)ENSG00000164877
Phylogenetic Trees/Animal Genes : TreeFamMICALL2
HOVERGENQ8IY33
HOGENOMQ8IY33
Homologs : HomoloGeneMICALL2
Homology/Alignments : Family Browser (UCSC)MICALL2
Gene fusions - Rearrangements
Fusion : MitelmanMICALL2/SDK1 [7p22.3/7p22.2]  
Fusion: TCGAMICALL2 7p22.3 SDK1 7p22.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMICALL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MICALL2
dbVarMICALL2
ClinVarMICALL2
1000_GenomesMICALL2 
Exome Variant ServerMICALL2
ExAC (Exome Aggregation Consortium)MICALL2 (select the gene name)
Genetic variants : HAPMAP79778
Genomic Variants (DGV)MICALL2 [DGVbeta]
DECIPHERMICALL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMICALL2 
Mutations
ICGC Data PortalMICALL2 
TCGA Data PortalMICALL2 
Broad Tumor PortalMICALL2
OASIS PortalMICALL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMICALL2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMICALL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MICALL2
DgiDB (Drug Gene Interaction Database)MICALL2
DoCM (Curated mutations)MICALL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MICALL2 (select a term)
intoGenMICALL2
Cancer3DMICALL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMICALL2
Genetic Testing Registry MICALL2
NextProtQ8IY33 [Medical]
TSGene79778
GENETestsMICALL2
Target ValidationMICALL2
Huge Navigator MICALL2 [HugePedia]
snp3D : Map Gene to Disease79778
BioCentury BCIQMICALL2
ClinGenMICALL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79778
Chemical/Pharm GKB GenePA162395928
Clinical trialMICALL2
Miscellaneous
canSAR (ICR)MICALL2 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMICALL2
EVEXMICALL2
GoPubMedMICALL2
iHOPMICALL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:43:01 CEST 2017

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