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MID1IP1 (MID1 interacting protein 1)

Identity

Alias_namesMID1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
Alias_symbol (synonym)STRAIT11499
FLJ10386
MIG12
THRSPL
G12-like
Other aliasS14R
HGNC (Hugo) MID1IP1
LocusID (NCBI) 58526
Atlas_Id 68980
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 38801432 and ends at 38806530 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MID1IP1   20715
Cards
Entrez_Gene (NCBI)MID1IP1  58526  MID1 interacting protein 1
AliasesG12-like; MIG12; S14R; STRAIT11499; 
THRSPL
GeneCards (Weizmann)MID1IP1
Ensembl hg19 (Hinxton)ENSG00000165175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165175 [Gene_View]  ENSG00000165175 [Sequence]  chrX:38801432-38806530 [Contig_View]  MID1IP1 [Vega]
ICGC DataPortalENSG00000165175
TCGA cBioPortalMID1IP1
AceView (NCBI)MID1IP1
Genatlas (Paris)MID1IP1
WikiGenes58526
SOURCE (Princeton)MID1IP1
Genetics Home Reference (NIH)MID1IP1
Genomic and cartography
GoldenPath hg38 (UCSC)MID1IP1  -     chrX:38801432-38806530 +  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MID1IP1  -     Xp11.4   [Description]    (hg19-Feb_2009)
EnsemblMID1IP1 - Xp11.4 [CytoView hg19]  MID1IP1 - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBIMID1IP1 [Mapview hg19]  MID1IP1 [Mapview hg38]
OMIM300961   
Gene and transcription
Genbank (Entrez)AF050158 AJ272057 AK001248 AW086438 BC008908
RefSeq transcript (Entrez)NM_001098790 NM_001098791 NM_021242
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MID1IP1
Cluster EST : UnigeneHs.662789 [ NCBI ]
CGAP (NCI)Hs.662789
Alternative Splicing GalleryENSG00000165175
Gene ExpressionMID1IP1 [ NCBI-GEO ]   MID1IP1 [ EBI - ARRAY_EXPRESS ]   MID1IP1 [ SEEK ]   MID1IP1 [ MEM ]
Gene Expression Viewer (FireBrowse)MID1IP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)58526
GTEX Portal (Tissue expression)MID1IP1
Human Protein AtlasENSG00000165175-MID1IP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NPA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NPA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NPA3
Splice isoforms : SwissVarQ9NPA3
PhosPhoSitePlusQ9NPA3
Domains : Interpro (EBI)Spot_14   
Domain families : Pfam (Sanger)Spot_14 (PF07084)   
Domain families : Pfam (NCBI)pfam07084   
Conserved Domain (NCBI)MID1IP1
DMDM Disease mutations58526
Blocks (Seattle)MID1IP1
SuperfamilyQ9NPA3
Human Protein Atlas [tissue]ENSG00000165175-MID1IP1 [tissue]
Peptide AtlasQ9NPA3
HPRD06732
IPIIPI00009730   
Protein Interaction databases
DIP (DOE-UCLA)Q9NPA3
IntAct (EBI)Q9NPA3
FunCoupENSG00000165175
BioGRIDMID1IP1
STRING (EMBL)MID1IP1
ZODIACMID1IP1
Ontologies - Pathways
QuickGOQ9NPA3
Ontology : AmiGO###############################################################################################################################################################################################################################################################                            
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                            
NDEx NetworkMID1IP1
Atlas of Cancer Signalling NetworkMID1IP1
Wikipedia pathwaysMID1IP1
Orthology - Evolution
OrthoDB58526
GeneTree (enSembl)ENSG00000165175
Phylogenetic Trees/Animal Genes : TreeFamMID1IP1
HOVERGENQ9NPA3
HOGENOMQ9NPA3
Homologs : HomoloGeneMID1IP1
Homology/Alignments : Family Browser (UCSC)MID1IP1
Gene fusions - Rearrangements
Fusion : QuiverMID1IP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMID1IP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MID1IP1
dbVarMID1IP1
ClinVarMID1IP1
1000_GenomesMID1IP1 
Exome Variant ServerMID1IP1
ExAC (Exome Aggregation Consortium)ENSG00000165175
GNOMAD BrowserENSG00000165175
Varsome BrowserMID1IP1
Genetic variants : HAPMAP58526
Genomic Variants (DGV)MID1IP1 [DGVbeta]
DECIPHERMID1IP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMID1IP1 
Mutations
ICGC Data PortalMID1IP1 
TCGA Data PortalMID1IP1 
Broad Tumor PortalMID1IP1
OASIS PortalMID1IP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMID1IP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMID1IP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MID1IP1
DgiDB (Drug Gene Interaction Database)MID1IP1
DoCM (Curated mutations)MID1IP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MID1IP1 (select a term)
intoGenMID1IP1
Cancer3DMID1IP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300961   
Orphanet
DisGeNETMID1IP1
MedgenMID1IP1
Genetic Testing Registry MID1IP1
NextProtQ9NPA3 [Medical]
TSGene58526
GENETestsMID1IP1
Target ValidationMID1IP1
Huge Navigator MID1IP1 [HugePedia]
snp3D : Map Gene to Disease58526
BioCentury BCIQMID1IP1
ClinGenMID1IP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD58526
Chemical/Pharm GKB GenePA134941916
Clinical trialMID1IP1
Miscellaneous
canSAR (ICR)MID1IP1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMID1IP1
EVEXMID1IP1
GoPubMedMID1IP1
iHOPMID1IP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:12:56 CEST 2018
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