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MIER3 (MIER family member 3)

Identity

Alias (NCBI)-
HGNC (Hugo) MIER3
HGNC Alias symbFLJ35954
DKFZp686L09111
DKFZp781I1119
HGNC Previous namemesoderm induction early response 1, family member 3
LocusID (NCBI) 166968
Atlas_Id 53231
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 56919602 and ends at 56952130 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MIER3 (5q11.2) / CDC20B (5q11.2)RGS3 (9q32) / MIER3 (5q11.2)RGS3 9q32 / MIER3 5q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)MIER3   26678
Cards
Entrez_Gene (NCBI)MIER3    MIER family member 3
Aliases
GeneCards (Weizmann)MIER3
Ensembl hg19 (Hinxton)ENSG00000155545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155545 [Gene_View]  ENSG00000155545 [Sequence]  chr5:56919602-56952130 [Contig_View]  MIER3 [Vega]
ICGC DataPortalENSG00000155545
TCGA cBioPortalMIER3
AceView (NCBI)MIER3
Genatlas (Paris)MIER3
SOURCE (Princeton)MIER3
Genetics Home Reference (NIH)MIER3
Genomic and cartography
GoldenPath hg38 (UCSC)MIER3  -     chr5:56919602-56952130 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIER3  -     5q11.2   [Description]    (hg19-Feb_2009)
GoldenPathMIER3 - 5q11.2 [CytoView hg19]  MIER3 - 5q11.2 [CytoView hg38]
ImmunoBaseENSG00000155545
Genome Data Viewer NCBIMIER3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI470450 AK002183 AK093273 AK299285 BC013936
RefSeq transcript (Entrez)NM_001297598 NM_001297599 NM_152622
Consensus coding sequences : CCDS (NCBI)MIER3
Gene ExpressionMIER3 [ NCBI-GEO ]   MIER3 [ EBI - ARRAY_EXPRESS ]   MIER3 [ SEEK ]   MIER3 [ MEM ]
Gene Expression Viewer (FireBrowse)MIER3 [ Firebrowse - Broad ]
GenevisibleExpression of MIER3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166968
GTEX Portal (Tissue expression)MIER3
Human Protein AtlasENSG00000155545-MIER3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3K6
PhosPhoSitePlusQ7Z3K6
Domaine pattern : Prosite (Expaxy)ELM2 (PS51156)    SANT (PS51293)   
Domains : Interpro (EBI)ELM2_dom    Homeobox-like_sf    MIER/MTA    MIER3    SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)ELM2 (PF01448)    Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam01448    pfam00249   
Domain families : Smart (EMBL)ELM2 (SM01189)  SANT (SM00717)  
Conserved Domain (NCBI)MIER3
SuperfamilyQ7Z3K6
AlphaFold pdb e-kbQ7Z3K6   
Human Protein Atlas [tissue]ENSG00000155545-MIER3 [tissue]
HPRD08199
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3K6
IntAct (EBI)Q7Z3K6
BioGRIDMIER3
STRING (EMBL)MIER3
ZODIACMIER3
Ontologies - Pathways
QuickGOQ7Z3K6
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  transcription corepressor activity  histone deacetylase activity  nucleus  nucleoplasm  nucleoplasm  histone deacetylation  protein-containing complex  histone deacetylase binding  RNA polymerase II-specific DNA-binding transcription factor binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  transcription corepressor activity  histone deacetylase activity  nucleus  nucleoplasm  nucleoplasm  histone deacetylation  protein-containing complex  histone deacetylase binding  RNA polymerase II-specific DNA-binding transcription factor binding  
NDEx NetworkMIER3
Atlas of Cancer Signalling NetworkMIER3
Wikipedia pathwaysMIER3
Orthology - Evolution
OrthoDB166968
GeneTree (enSembl)ENSG00000155545
Phylogenetic Trees/Animal Genes : TreeFamMIER3
Homologs : HomoloGeneMIER3
Homology/Alignments : Family Browser (UCSC)MIER3
Gene fusions - Rearrangements
Fusion : MitelmanRGS3/MIER3 [9q32/5q11.2]  
Fusion : QuiverMIER3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIER3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIER3
dbVarMIER3
ClinVarMIER3
MonarchMIER3
1000_GenomesMIER3 
Exome Variant ServerMIER3
GNOMAD BrowserENSG00000155545
Varsome BrowserMIER3
ACMGMIER3 variants
VarityQ7Z3K6
Genomic Variants (DGV)MIER3 [DGVbeta]
DECIPHERMIER3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIER3 
Mutations
ICGC Data PortalMIER3 
TCGA Data PortalMIER3 
Broad Tumor PortalMIER3
OASIS PortalMIER3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMIER3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMIER3
Mutations and Diseases : HGMDMIER3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMIER3
DgiDB (Drug Gene Interaction Database)MIER3
DoCM (Curated mutations)MIER3
CIViC (Clinical Interpretations of Variants in Cancer)MIER3
Cancer3DMIER3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMIER3
MedgenMIER3
Genetic Testing Registry MIER3
NextProtQ7Z3K6 [Medical]
GENETestsMIER3
Target ValidationMIER3
Huge Navigator MIER3 [HugePedia]
ClinGenMIER3
Clinical trials, drugs, therapy
MyCancerGenomeMIER3
Protein Interactions : CTDMIER3
Pharm GKB GenePA145008088
PharosQ7Z3K6
Clinical trialMIER3
Miscellaneous
canSAR (ICR)MIER3
HarmonizomeMIER3
DataMed IndexMIER3
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMIER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:18:34 CEST 2021

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