Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIER3 (MIER family member 3)

Identity

Alias_namesmesoderm induction early response 1
Alias_symbol (synonym)FLJ35954
DKFZp686L09111
DKFZp781I1119
Other alias-
HGNC (Hugo) MIER3
LocusID (NCBI) 166968
Atlas_Id 53231
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 56215429 and ends at 56247957 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MIER3 (5q11.2) / CDC20B (5q11.2)RGS3 (9q32) / MIER3 (5q11.2)RGS3 9q32 / MIER3 5q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIER3   26678
Cards
Entrez_Gene (NCBI)MIER3  166968  MIER family member 3
Aliases
GeneCards (Weizmann)MIER3
Ensembl hg19 (Hinxton)ENSG00000155545 [Gene_View]  chr5:56215429-56247957 [Contig_View]  MIER3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000155545 [Gene_View]  chr5:56215429-56247957 [Contig_View]  MIER3 [Vega]
ICGC DataPortalENSG00000155545
TCGA cBioPortalMIER3
AceView (NCBI)MIER3
Genatlas (Paris)MIER3
WikiGenes166968
SOURCE (Princeton)MIER3
Genetics Home Reference (NIH)MIER3
Genomic and cartography
GoldenPath hg19 (UCSC)MIER3  -     chr5:56215429-56247957 -  5q11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIER3  -     5q11.2   [Description]    (hg38-Dec_2013)
EnsemblMIER3 - 5q11.2 [CytoView hg19]  MIER3 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIMIER3 [Mapview hg19]  MIER3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI470450 AK002183 AK093273 AK299285 AM393594
RefSeq transcript (Entrez)NM_001297598 NM_001297599 NM_152622
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)MIER3
Cluster EST : UnigeneHs.657594 [ NCBI ]
CGAP (NCI)Hs.657594
Alternative Splicing GalleryENSG00000155545
Gene ExpressionMIER3 [ NCBI-GEO ]   MIER3 [ EBI - ARRAY_EXPRESS ]   MIER3 [ SEEK ]   MIER3 [ MEM ]
Gene Expression Viewer (FireBrowse)MIER3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)166968
GTEX Portal (Tissue expression)MIER3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3K6
Splice isoforms : SwissVarQ7Z3K6
PhosPhoSitePlusQ7Z3K6
Domaine pattern : Prosite (Expaxy)ELM2 (PS51156)    SANT (PS51293)   
Domains : Interpro (EBI)ELM2_dom    Homeodomain-like    MIER3    SANT/Myb    SANT_dom   
Domain families : Pfam (Sanger)ELM2 (PF01448)    Myb_DNA-binding (PF00249)   
Domain families : Pfam (NCBI)pfam01448    pfam00249   
Domain families : Smart (EMBL)SANT (SM00717)  
Conserved Domain (NCBI)MIER3
DMDM Disease mutations166968
Blocks (Seattle)MIER3
SuperfamilyQ7Z3K6
Human Protein AtlasENSG00000155545
Peptide AtlasQ7Z3K6
HPRD08199
IPIIPI00465053   IPI00657688   IPI00657714   IPI00879110   IPI00470816   IPI00795302   IPI00853252   IPI00917090   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3K6
IntAct (EBI)Q7Z3K6
FunCoupENSG00000155545
BioGRIDMIER3
STRING (EMBL)MIER3
ZODIACMIER3
Ontologies - Pathways
QuickGOQ7Z3K6
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  
NDEx NetworkMIER3
Atlas of Cancer Signalling NetworkMIER3
Wikipedia pathwaysMIER3
Orthology - Evolution
OrthoDB166968
GeneTree (enSembl)ENSG00000155545
Phylogenetic Trees/Animal Genes : TreeFamMIER3
HOVERGENQ7Z3K6
HOGENOMQ7Z3K6
Homologs : HomoloGeneMIER3
Homology/Alignments : Family Browser (UCSC)MIER3
Gene fusions - Rearrangements
Fusion : MitelmanRGS3/MIER3 [9q32/5q11.2]  [t(5;9)(q11;q32)]  
Fusion: TCGARGS3 9q32 MIER3 5q11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIER3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIER3
dbVarMIER3
ClinVarMIER3
1000_GenomesMIER3 
Exome Variant ServerMIER3
ExAC (Exome Aggregation Consortium)MIER3 (select the gene name)
Genetic variants : HAPMAP166968
Genomic Variants (DGV)MIER3 [DGVbeta]
DECIPHER (Syndromes)5:56215429-56247957  ENSG00000155545
CONAN: Copy Number AnalysisMIER3 
Mutations
ICGC Data PortalMIER3 
TCGA Data PortalMIER3 
Broad Tumor PortalMIER3
OASIS PortalMIER3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMIER3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMIER3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MIER3
DgiDB (Drug Gene Interaction Database)MIER3
DoCM (Curated mutations)MIER3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIER3 (select a term)
intoGenMIER3
Cancer3DMIER3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMIER3
Genetic Testing Registry MIER3
NextProtQ7Z3K6 [Medical]
TSGene166968
GENETestsMIER3
Huge Navigator MIER3 [HugePedia]
snp3D : Map Gene to Disease166968
BioCentury BCIQMIER3
ClinGenMIER3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD166968
Chemical/Pharm GKB GenePA145008088
Clinical trialMIER3
Miscellaneous
canSAR (ICR)MIER3 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIER3
EVEXMIER3
GoPubMedMIER3
iHOPMIER3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:09:11 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.