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MINDY1 (MINDY lysine 48 deubiquitinase 1)

Identity

Alias_namesFAM63A
family with sequence similarity 63, member A
family with sequence similarity 63 member A
MINDY deubiquitinase 1
Alias_symbol (synonym)FLJ11280
MINDY-1
Other alias
HGNC (Hugo) MINDY1
LocusID (NCBI) 55793
Atlas_Id 79000
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 150996825 and ends at 151006909 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MINDY1   25648
Cards
Entrez_Gene (NCBI)MINDY1  55793  MINDY lysine 48 deubiquitinase 1
AliasesFAM63A; MINDY-1
GeneCards (Weizmann)MINDY1
Ensembl hg19 (Hinxton)ENSG00000143409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143409 [Gene_View]  chr1:150996825-151006909 [Contig_View]  MINDY1 [Vega]
ICGC DataPortalENSG00000143409
TCGA cBioPortalMINDY1
AceView (NCBI)MINDY1
Genatlas (Paris)MINDY1
WikiGenes55793
SOURCE (Princeton)MINDY1
Genetics Home Reference (NIH)MINDY1
Genomic and cartography
GoldenPath hg38 (UCSC)MINDY1  -     chr1:150996825-151006909 -  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MINDY1  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblMINDY1 - 1q21.3 [CytoView hg19]  MINDY1 - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIMINDY1 [Mapview hg19]  MINDY1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB037811 AK002142 AK125493 AK125959 AK301946
RefSeq transcript (Entrez)NM_001040217 NM_001163258 NM_001163259 NM_001163260 NM_001319998 NM_018379
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MINDY1
Cluster EST : UnigeneHs.743952 [ NCBI ]
CGAP (NCI)Hs.743952
Alternative Splicing GalleryENSG00000143409
Gene ExpressionMINDY1 [ NCBI-GEO ]   MINDY1 [ EBI - ARRAY_EXPRESS ]   MINDY1 [ SEEK ]   MINDY1 [ MEM ]
Gene Expression Viewer (FireBrowse)MINDY1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55793
GTEX Portal (Tissue expression)MINDY1
Human Protein AtlasENSG00000143409-MINDY1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5J2
Splice isoforms : SwissVarQ8N5J2
PhosPhoSitePlusQ8N5J2
Domains : Interpro (EBI)MINDY    MINDY_domain   
Domain families : Pfam (Sanger)DUF544 (PF04424)   
Domain families : Pfam (NCBI)pfam04424   
Conserved Domain (NCBI)MINDY1
DMDM Disease mutations55793
Blocks (Seattle)MINDY1
PDB (SRS)5JKN    5JQS    5MN9   
PDB (PDBSum)5JKN    5JQS    5MN9   
PDB (IMB)5JKN    5JQS    5MN9   
PDB (RSDB)5JKN    5JQS    5MN9   
Structural Biology KnowledgeBase5JKN    5JQS    5MN9   
SCOP (Structural Classification of Proteins)5JKN    5JQS    5MN9   
CATH (Classification of proteins structures)5JKN    5JQS    5MN9   
SuperfamilyQ8N5J2
Human Protein Atlas [tissue]ENSG00000143409-MINDY1 [tissue]
Peptide AtlasQ8N5J2
IPIIPI00413164   IPI00646860   IPI00292905   IPI00929269   IPI01025646   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5J2
IntAct (EBI)Q8N5J2
FunCoupENSG00000143409
BioGRIDMINDY1
STRING (EMBL)MINDY1
ZODIACMINDY1
Ontologies - Pathways
QuickGOQ8N5J2
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  protein binding  biological_process  cysteine-type carboxypeptidase activity  K48-linked polyubiquitin modification-dependent protein binding  extracellular exosome  protein K48-linked deubiquitination  Lys48-specific deubiquitinase activity  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  protein binding  biological_process  cysteine-type carboxypeptidase activity  K48-linked polyubiquitin modification-dependent protein binding  extracellular exosome  protein K48-linked deubiquitination  Lys48-specific deubiquitinase activity  
NDEx NetworkMINDY1
Atlas of Cancer Signalling NetworkMINDY1
Wikipedia pathwaysMINDY1
Orthology - Evolution
OrthoDB55793
GeneTree (enSembl)ENSG00000143409
Phylogenetic Trees/Animal Genes : TreeFamMINDY1
HOVERGENQ8N5J2
HOGENOMQ8N5J2
Homologs : HomoloGeneMINDY1
Homology/Alignments : Family Browser (UCSC)MINDY1
Gene fusions - Rearrangements
Tumor Fusion PortalMINDY1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMINDY1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MINDY1
dbVarMINDY1
ClinVarMINDY1
1000_GenomesMINDY1 
Exome Variant ServerMINDY1
ExAC (Exome Aggregation Consortium)ENSG00000143409
GNOMAD BrowserENSG00000143409
Genetic variants : HAPMAP55793
Genomic Variants (DGV)MINDY1 [DGVbeta]
DECIPHERMINDY1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMINDY1 
Mutations
ICGC Data PortalMINDY1 
TCGA Data PortalMINDY1 
Broad Tumor PortalMINDY1
OASIS PortalMINDY1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMINDY1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MINDY1
DgiDB (Drug Gene Interaction Database)MINDY1
DoCM (Curated mutations)MINDY1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MINDY1 (select a term)
intoGenMINDY1
Cancer3DMINDY1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMINDY1
MedgenMINDY1
Genetic Testing Registry MINDY1
NextProtQ8N5J2 [Medical]
TSGene55793
GENETestsMINDY1
Target ValidationMINDY1
Huge Navigator MINDY1 [HugePedia]
snp3D : Map Gene to Disease55793
BioCentury BCIQMINDY1
ClinGenMINDY1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55793
Chemical/Pharm GKB GenePA142671872
Clinical trialMINDY1
Miscellaneous
canSAR (ICR)MINDY1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMINDY1
EVEXMINDY1
GoPubMedMINDY1
iHOPMINDY1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:01:25 CET 2017

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