Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MINDY3 (MINDY lysine 48 deubiquitinase 3)

Identity

Alias (NCBI)C10orf97
CARP
DERP5
FAM188A
MST126
MSTP126
my042
HGNC (Hugo) MINDY3
HGNC Alias symbFLJ13397
CARP
my042
DERP5
HGNC Alias namecaspase recruitment domain containing pro-apoptotic protein
 CARD-containing protein
HGNC Previous nameC10orf97
 FAM188A
HGNC Previous namechromosome 10 open reading frame 97
 family with sequence similarity 188 member A
 MINDY deubiquitinase 3
LocusID (NCBI) 80013
Atlas_Id 56747
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 15778174 and ends at 15860507 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CAMK1D 10p13 / FAM188A 10p13FAM188A 10p13 / CACNB2 10p12.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)MINDY3   23578
Cards
Entrez_Gene (NCBI)MINDY3    MINDY lysine 48 deubiquitinase 3
AliasesC10orf97; CARP; DERP5; FAM188A; 
MST126; MSTP126; my042
GeneCards (Weizmann)MINDY3
Ensembl hg19 (Hinxton)ENSG00000148481 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148481 [Gene_View]  ENSG00000148481 [Sequence]  chr10:15778174-15860507 [Contig_View]  MINDY3 [Vega]
ICGC DataPortalENSG00000148481
TCGA cBioPortalMINDY3
AceView (NCBI)MINDY3
Genatlas (Paris)MINDY3
SOURCE (Princeton)MINDY3
Genetics Home Reference (NIH)MINDY3
Genomic and cartography
GoldenPath hg38 (UCSC)MINDY3  -     chr10:15778174-15860507 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MINDY3  -     10p13   [Description]    (hg19-Feb_2009)
GoldenPathMINDY3 - 10p13 [CytoView hg19]  MINDY3 - 10p13 [CytoView hg38]
ImmunoBaseENSG00000148481
genome Data Viewer NCBIMINDY3 [Mapview hg19]  
OMIM611649   
Gene and transcription
Genbank (Entrez)AB014761 AF063600 AF176916 AI573091 AK023459
RefSeq transcript (Entrez)NM_001318330 NM_024948
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MINDY3
Alternative Splicing GalleryENSG00000148481
Gene ExpressionMINDY3 [ NCBI-GEO ]   MINDY3 [ EBI - ARRAY_EXPRESS ]   MINDY3 [ SEEK ]   MINDY3 [ MEM ]
Gene Expression Viewer (FireBrowse)MINDY3 [ Firebrowse - Broad ]
GenevisibleExpression of MINDY3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80013
GTEX Portal (Tissue expression)MINDY3
Human Protein AtlasENSG00000148481-MINDY3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8M7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8M7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8M7
Splice isoforms : SwissVarQ9H8M7
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   [ MEROPS ]
PhosPhoSitePlusQ9H8M7
Domains : Interpro (EBI)EF-hand-dom_pair    MINDY-3/4_CD    MINY3/4   
Domain families : Pfam (Sanger)DUF4205 (PF13898)   
Domain families : Pfam (NCBI)pfam13898   
Domain families : Smart (EMBL)DUF4205 (SM01174)  
Conserved Domain (NCBI)MINDY3
Blocks (Seattle)MINDY3
SuperfamilyQ9H8M7
Human Protein Atlas [tissue]ENSG00000148481-MINDY3 [tissue]
Peptide AtlasQ9H8M7
IPIIPI00549993   IPI00885206   IPI00644407   IPI00165121   IPI00646364   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8M7
IntAct (EBI)Q9H8M7
BioGRIDMINDY3
STRING (EMBL)MINDY3
ZODIACMINDY3
Ontologies - Pathways
QuickGOQ9H8M7
Ontology : AmiGOthiol-dependent ubiquitin-specific protease activity  protein binding  nucleoplasm  apoptotic process  cysteine-type peptidase activity  protein phosphopantetheinylation  nuclear membrane  protein K48-linked deubiquitination  Lys48-specific deubiquitinase activity  Lys48-specific deubiquitinase activity  
Ontology : EGO-EBIthiol-dependent ubiquitin-specific protease activity  protein binding  nucleoplasm  apoptotic process  cysteine-type peptidase activity  protein phosphopantetheinylation  nuclear membrane  protein K48-linked deubiquitination  Lys48-specific deubiquitinase activity  Lys48-specific deubiquitinase activity  
NDEx NetworkMINDY3
Atlas of Cancer Signalling NetworkMINDY3
Wikipedia pathwaysMINDY3
Orthology - Evolution
OrthoDB80013
GeneTree (enSembl)ENSG00000148481
Phylogenetic Trees/Animal Genes : TreeFamMINDY3
HOGENOMQ9H8M7
Homologs : HomoloGeneMINDY3
Homology/Alignments : Family Browser (UCSC)MINDY3
Gene fusions - Rearrangements
Fusion : MitelmanFAM188A/CACNB2 [10p13/10p12.33]  
Fusion PortalCAMK1D 10p13 FAM188A 10p13 BRCA
Fusion PortalFAM188A 10p13 CACNB2 10p12.33 LGG
Fusion : QuiverMINDY3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMINDY3 [hg38]
dbVarMINDY3
ClinVarMINDY3
MonarchMINDY3
1000_GenomesMINDY3 
Exome Variant ServerMINDY3
GNOMAD BrowserENSG00000148481
Varsome BrowserMINDY3
Genomic Variants (DGV)MINDY3 [DGVbeta]
DECIPHERMINDY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMINDY3 
Mutations
ICGC Data PortalMINDY3 
TCGA Data PortalMINDY3 
Broad Tumor PortalMINDY3
OASIS PortalMINDY3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMINDY3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DMINDY3
Mutations and Diseases : HGMDMINDY3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MINDY3
DgiDB (Drug Gene Interaction Database)MINDY3
DoCM (Curated mutations)MINDY3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MINDY3 (select a term)
intoGenMINDY3
Cancer3DMINDY3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611649   
Orphanet
DisGeNETMINDY3
MedgenMINDY3
Genetic Testing Registry MINDY3
NextProtQ9H8M7 [Medical]
GENETestsMINDY3
Target ValidationMINDY3
Huge Navigator MINDY3 [HugePedia]
ClinGenMINDY3
Clinical trials, drugs, therapy
MyCancerGenomeMINDY3
Protein Interactions : CTD
Pharm GKB GenePA165548562
PharosQ9H8M7
Clinical trialMINDY3
Miscellaneous
canSAR (ICR)MINDY3 (select the gene name)
HarmonizomeMINDY3
DataMed IndexMINDY3
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMINDY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:31:49 CET 2021

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