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MINDY3 (MINDY lysine 48 deubiquitinase 3)

Identity

Other aliasC10orf97
CARP
DERP5
FAM188A
MST126
MSTP126
my042
HGNC (Hugo) MINDY3
LocusID (NCBI) 80013
Atlas_Id 56747
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 15778169 and ends at 15860533 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CAMK1D 10p13 / FAM188A 10p13FAM188A 10p13 / CACNB2 10p12.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MINDY3   23578
Cards
Entrez_Gene (NCBI)MINDY3  80013  MINDY lysine 48 deubiquitinase 3
AliasesC10orf97; CARP; DERP5; FAM188A; 
MST126; MSTP126; my042
GeneCards (Weizmann)MINDY3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr10:15778169-15860533 [Contig_View]  MINDY3 [Vega]
TCGA cBioPortalMINDY3
AceView (NCBI)MINDY3
Genatlas (Paris)MINDY3
WikiGenes80013
SOURCE (Princeton)MINDY3
Genetics Home Reference (NIH)MINDY3
Genomic and cartography
GoldenPath hg38 (UCSC)MINDY3  -     chr10:15778169-15860533 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MINDY3  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblMINDY3 - 10p13 [CytoView hg19]  MINDY3 - 10p13 [CytoView hg38]
Mapping of homologs : NCBIMINDY3 [Mapview hg19]  MINDY3 [Mapview hg38]
OMIM611649   
Gene and transcription
Genbank (Entrez)AB014761 AF063600 AF176916 AI573091 AK023459
RefSeq transcript (Entrez)NM_001318330 NM_024948
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MINDY3
Cluster EST : UnigeneHs.158870 [ NCBI ]
CGAP (NCI)Hs.158870
Gene ExpressionMINDY3 [ NCBI-GEO ]   MINDY3 [ EBI - ARRAY_EXPRESS ]   MINDY3 [ SEEK ]   MINDY3 [ MEM ]
Gene Expression Viewer (FireBrowse)MINDY3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80013
GTEX Portal (Tissue expression)MINDY3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H8M7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H8M7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H8M7
Splice isoforms : SwissVarQ9H8M7
Catalytic activity : Enzyme3.4.19.12 [ Enzyme-Expasy ]   3.4.19.123.4.19.12 [ IntEnz-EBI ]   3.4.19.12 [ BRENDA ]   3.4.19.12 [ KEGG ]   
PhosPhoSitePlusQ9H8M7
Domains : Interpro (EBI)DUF4205    EF-hand-dom_pair   
Domain families : Pfam (Sanger)DUF4205 (PF13898)   
Domain families : Pfam (NCBI)pfam13898   
Domain families : Smart (EMBL)DUF4205 (SM01174)  
Conserved Domain (NCBI)MINDY3
DMDM Disease mutations80013
Blocks (Seattle)MINDY3
SuperfamilyQ9H8M7
Peptide AtlasQ9H8M7
IPIIPI00549993   IPI00885206   IPI00644407   IPI00165121   IPI00646364   
Protein Interaction databases
DIP (DOE-UCLA)Q9H8M7
IntAct (EBI)Q9H8M7
BioGRIDMINDY3
STRING (EMBL)MINDY3
ZODIACMINDY3
Ontologies - Pathways
QuickGOQ9H8M7
Ontology : AmiGOprotein binding  nucleoplasm  apoptotic process  cysteine-type carboxypeptidase activity  nuclear membrane  thiol-dependent ubiquitinyl hydrolase activity  protein K48-linked deubiquitination  Lys48-specific deubiquitinase activity  
Ontology : EGO-EBIprotein binding  nucleoplasm  apoptotic process  cysteine-type carboxypeptidase activity  nuclear membrane  thiol-dependent ubiquitinyl hydrolase activity  protein K48-linked deubiquitination  Lys48-specific deubiquitinase activity  
NDEx NetworkMINDY3
Atlas of Cancer Signalling NetworkMINDY3
Wikipedia pathwaysMINDY3
Orthology - Evolution
OrthoDB80013
Phylogenetic Trees/Animal Genes : TreeFamMINDY3
HOVERGENQ9H8M7
HOGENOMQ9H8M7
Homologs : HomoloGeneMINDY3
Homology/Alignments : Family Browser (UCSC)MINDY3
Gene fusions - Rearrangements
Fusion : MitelmanFAM188A/CACNB2 [10p13/10p12.33]  
Fusion: TCGACAMK1D 10p13 FAM188A 10p13 BRCA
Fusion: TCGAFAM188A 10p13 CACNB2 10p12.33 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMINDY3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MINDY3
dbVarMINDY3
ClinVarMINDY3
1000_GenomesMINDY3 
Exome Variant ServerMINDY3
ExAC (Exome Aggregation Consortium)MINDY3 (select the gene name)
Genetic variants : HAPMAP80013
Genomic Variants (DGV)MINDY3 [DGVbeta]
DECIPHERMINDY3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMINDY3 
Mutations
ICGC Data PortalMINDY3 
TCGA Data PortalMINDY3 
Broad Tumor PortalMINDY3
OASIS PortalMINDY3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMINDY3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MINDY3
DgiDB (Drug Gene Interaction Database)MINDY3
DoCM (Curated mutations)MINDY3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MINDY3 (select a term)
intoGenMINDY3
Cancer3DMINDY3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611649   
Orphanet
MedgenMINDY3
Genetic Testing Registry MINDY3
NextProtQ9H8M7 [Medical]
TSGene80013
GENETestsMINDY3
Target ValidationMINDY3
Huge Navigator MINDY3 [HugePedia]
snp3D : Map Gene to Disease80013
BioCentury BCIQMINDY3
ClinGenMINDY3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80013
Chemical/Pharm GKB GenePA165548562
Clinical trialMINDY3
Miscellaneous
canSAR (ICR)MINDY3 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMINDY3
EVEXMINDY3
GoPubMedMINDY3
iHOPMINDY3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:18:06 CEST 2017

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