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MINDY4 (MINDY lysine 48 deubiquitinase 4)

Identity

Alias_namesC7orf67
FAM188B
chromosome 7 open reading frame 67
family with sequence similarity 188, member B
family with sequence similarity 188 member B
MINDY deubiquitinase 4
Alias_symbol (synonym)FLJ22374
Other alias
HGNC (Hugo) MINDY4
LocusID (NCBI) 84182
Atlas_Id 79047
Location 7p14.3  [Link to chromosome band 7p14]
Location_base_pair Starts at 30771417 and ends at 30892387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MINDY4   21916
Cards
Entrez_Gene (NCBI)MINDY4  84182  MINDY lysine 48 deubiquitinase 4
AliasesC7orf67; FAM188B
GeneCards (Weizmann)MINDY4
Ensembl hg19 (Hinxton)ENSG00000106125 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106125 [Gene_View]  chr7:30771417-30892387 [Contig_View]  MINDY4 [Vega]
ICGC DataPortalENSG00000106125
TCGA cBioPortalMINDY4
AceView (NCBI)MINDY4
Genatlas (Paris)MINDY4
WikiGenes84182
SOURCE (Princeton)MINDY4
Genetics Home Reference (NIH)MINDY4
Genomic and cartography
GoldenPath hg38 (UCSC)MINDY4  -     chr7:30771417-30892387 +  7p14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MINDY4  -     7p14.3   [Description]    (hg19-Feb_2009)
EnsemblMINDY4 - 7p14.3 [CytoView hg19]  MINDY4 - 7p14.3 [CytoView hg38]
Mapping of homologs : NCBIMINDY4 [Mapview hg19]  MINDY4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF538962 AK026027 AK090826 AK128558 BC043210
RefSeq transcript (Entrez)NM_032222
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MINDY4
Cluster EST : UnigeneHs.660192 [ NCBI ]
CGAP (NCI)Hs.660192
Alternative Splicing GalleryENSG00000106125
Gene ExpressionMINDY4 [ NCBI-GEO ]   MINDY4 [ EBI - ARRAY_EXPRESS ]   MINDY4 [ SEEK ]   MINDY4 [ MEM ]
Gene Expression Viewer (FireBrowse)MINDY4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84182
GTEX Portal (Tissue expression)MINDY4
Human Protein AtlasENSG00000106125-MINDY4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0A6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0A6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0A6
Splice isoforms : SwissVarQ4G0A6
PhosPhoSitePlusQ4G0A6
Domains : Interpro (EBI)DUF4205   
Domain families : Pfam (Sanger)DUF4205 (PF13898)   
Domain families : Pfam (NCBI)pfam13898   
Domain families : Smart (EMBL)DUF4205 (SM01174)  
Conserved Domain (NCBI)MINDY4
DMDM Disease mutations84182
Blocks (Seattle)MINDY4
SuperfamilyQ4G0A6
Human Protein Atlas [tissue]ENSG00000106125-MINDY4 [tissue]
Peptide AtlasQ4G0A6
IPIIPI00396306   IPI00916741   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0A6
IntAct (EBI)Q4G0A6
FunCoupENSG00000106125
BioGRIDMINDY4
STRING (EMBL)MINDY4
ZODIACMINDY4
Ontologies - Pathways
QuickGOQ4G0A6
Ontology : AmiGOproteolysis  thiol-dependent ubiquitinyl hydrolase activity  
Ontology : EGO-EBIproteolysis  thiol-dependent ubiquitinyl hydrolase activity  
NDEx NetworkMINDY4
Atlas of Cancer Signalling NetworkMINDY4
Wikipedia pathwaysMINDY4
Orthology - Evolution
OrthoDB84182
GeneTree (enSembl)ENSG00000106125
Phylogenetic Trees/Animal Genes : TreeFamMINDY4
HOVERGENQ4G0A6
HOGENOMQ4G0A6
Homologs : HomoloGeneMINDY4
Homology/Alignments : Family Browser (UCSC)MINDY4
Gene fusions - Rearrangements
Tumor Fusion PortalMINDY4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMINDY4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MINDY4
dbVarMINDY4
ClinVarMINDY4
1000_GenomesMINDY4 
Exome Variant ServerMINDY4
ExAC (Exome Aggregation Consortium)ENSG00000106125
GNOMAD BrowserENSG00000106125
Genetic variants : HAPMAP84182
Genomic Variants (DGV)MINDY4 [DGVbeta]
DECIPHERMINDY4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMINDY4 
Mutations
ICGC Data PortalMINDY4 
TCGA Data PortalMINDY4 
Broad Tumor PortalMINDY4
OASIS PortalMINDY4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMINDY4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MINDY4
DgiDB (Drug Gene Interaction Database)MINDY4
DoCM (Curated mutations)MINDY4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MINDY4 (select a term)
intoGenMINDY4
Cancer3DMINDY4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMINDY4
MedgenMINDY4
Genetic Testing Registry MINDY4
NextProtQ4G0A6 [Medical]
TSGene84182
GENETestsMINDY4
Target ValidationMINDY4
Huge Navigator MINDY4 [HugePedia]
snp3D : Map Gene to Disease84182
BioCentury BCIQMINDY4
ClinGenMINDY4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84182
Chemical/Pharm GKB GenePA165618038
Clinical trialMINDY4
Miscellaneous
canSAR (ICR)MINDY4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMINDY4
EVEXMINDY4
GoPubMedMINDY4
iHOPMINDY4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:16:32 CET 2017

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