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MIPEP (mitochondrial intermediate peptidase)

Identity

Alias_symbol (synonym)MIP
Other aliasHMIP
HGNC (Hugo) MIPEP
LocusID (NCBI) 4285
Atlas_Id 41367
Location 13q12.12  [Link to chromosome band 13q12]
Location_base_pair Starts at 24304328 and ends at 24463587 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RMI2 (16p13.13) / MIPEP (13q12.12)SACS (13q12.12) / MIPEP (13q12.12)TBL1XR1 (3q26.32) / MIPEP (13q12.12)
ZDHHC20 (13q12.11) / MIPEP (13q12.12)SACS 13q12.12 / MIPEP 13q12.12TBL1XR1 3q26.32 / MIPEP 13q12.12
ZDHHC20 13q12.11 / MIPEP 13q12.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIPEP   7104
Cards
Entrez_Gene (NCBI)MIPEP  4285  mitochondrial intermediate peptidase
AliasesHMIP; MIP
GeneCards (Weizmann)MIPEP
Ensembl hg19 (Hinxton)ENSG00000027001 [Gene_View]  chr13:24304328-24463587 [Contig_View]  MIPEP [Vega]
Ensembl hg38 (Hinxton)ENSG00000027001 [Gene_View]  chr13:24304328-24463587 [Contig_View]  MIPEP [Vega]
ICGC DataPortalENSG00000027001
TCGA cBioPortalMIPEP
AceView (NCBI)MIPEP
Genatlas (Paris)MIPEP
WikiGenes4285
SOURCE (Princeton)MIPEP
Genetics Home Reference (NIH)MIPEP
Genomic and cartography
GoldenPath hg19 (UCSC)MIPEP  -     chr13:24304328-24463587 -  13q12.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIPEP  -     13q12.12   [Description]    (hg38-Dec_2013)
EnsemblMIPEP - 13q12.12 [CytoView hg19]  MIPEP - 13q12.12 [CytoView hg38]
Mapping of homologs : NCBIMIPEP [Mapview hg19]  MIPEP [Mapview hg38]
OMIM602241   
Gene and transcription
Genbank (Entrez)AK225290 AK291923 AK308908 BC009934 DA419922
RefSeq transcript (Entrez)NM_005932
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)MIPEP
Cluster EST : UnigeneHs.507498 [ NCBI ]
CGAP (NCI)Hs.507498
Alternative Splicing GalleryENSG00000027001
Gene ExpressionMIPEP [ NCBI-GEO ]   MIPEP [ EBI - ARRAY_EXPRESS ]   MIPEP [ SEEK ]   MIPEP [ MEM ]
Gene Expression Viewer (FireBrowse)MIPEP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4285
GTEX Portal (Tissue expression)MIPEP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99797   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99797  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99797
Splice isoforms : SwissVarQ99797
Catalytic activity : Enzyme3.4.24.59 [ Enzyme-Expasy ]   3.4.24.593.4.24.59 [ IntEnz-EBI ]   3.4.24.59 [ BRENDA ]   3.4.24.59 [ KEGG ]   
PhosPhoSitePlusQ99797
Domaine pattern : Prosite (Expaxy)ZINC_PROTEASE (PS00142)   
Domains : Interpro (EBI)MetalloPept_cat_dom    Neurolysin/TOP_dom2    Neurolysin/TOP_N    Pept_M3A_M3B   
Domain families : Pfam (Sanger)Peptidase_M3 (PF01432)   
Domain families : Pfam (NCBI)pfam01432   
Conserved Domain (NCBI)MIPEP
DMDM Disease mutations4285
Blocks (Seattle)MIPEP
SuperfamilyQ99797
Human Protein AtlasENSG00000027001
Peptide AtlasQ99797
HPRD03761
IPIIPI00241860   IPI00643638   
Protein Interaction databases
DIP (DOE-UCLA)Q99797
IntAct (EBI)Q99797
FunCoupENSG00000027001
BioGRIDMIPEP
STRING (EMBL)MIPEP
ZODIACMIPEP
Ontologies - Pathways
QuickGOQ99797
Ontology : AmiGOmetalloendopeptidase activity  mitochondrion  mitochondrial matrix  peptide metabolic process  protein processing involved in protein targeting to mitochondrion  metal ion binding  
Ontology : EGO-EBImetalloendopeptidase activity  mitochondrion  mitochondrial matrix  peptide metabolic process  protein processing involved in protein targeting to mitochondrion  metal ion binding  
NDEx NetworkMIPEP
Atlas of Cancer Signalling NetworkMIPEP
Wikipedia pathwaysMIPEP
Orthology - Evolution
OrthoDB4285
GeneTree (enSembl)ENSG00000027001
Phylogenetic Trees/Animal Genes : TreeFamMIPEP
HOVERGENQ99797
HOGENOMQ99797
Homologs : HomoloGeneMIPEP
Homology/Alignments : Family Browser (UCSC)MIPEP
Gene fusions - Rearrangements
Fusion : MitelmanSACS/MIPEP [13q12.12/13q12.12]  [t(13;13)(q12;q12)]  
Fusion : MitelmanTBL1XR1/MIPEP [3q26.32/13q12.12]  [t(3;13)(q26;q12)]  
Fusion : MitelmanZDHHC20/MIPEP [13q12.11/13q12.12]  [t(13;13)(q12;q12)]  
Fusion: TCGASACS 13q12.12 MIPEP 13q12.12 LUSC
Fusion: TCGATBL1XR1 3q26.32 MIPEP 13q12.12 OV
Fusion: TCGAZDHHC20 13q12.11 MIPEP 13q12.12 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIPEP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIPEP
dbVarMIPEP
ClinVarMIPEP
1000_GenomesMIPEP 
Exome Variant ServerMIPEP
ExAC (Exome Aggregation Consortium)MIPEP (select the gene name)
Genetic variants : HAPMAP4285
Genomic Variants (DGV)MIPEP [DGVbeta]
DECIPHER (Syndromes)13:24304328-24463587  ENSG00000027001
CONAN: Copy Number AnalysisMIPEP 
Mutations
ICGC Data PortalMIPEP 
TCGA Data PortalMIPEP 
Broad Tumor PortalMIPEP
OASIS PortalMIPEP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICMIPEP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDMIPEP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch MIPEP
DgiDB (Drug Gene Interaction Database)MIPEP
DoCM (Curated mutations)MIPEP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIPEP (select a term)
intoGenMIPEP
Cancer3DMIPEP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602241   
Orphanet
MedgenMIPEP
Genetic Testing Registry MIPEP
NextProtQ99797 [Medical]
TSGene4285
GENETestsMIPEP
Huge Navigator MIPEP [HugePedia]
snp3D : Map Gene to Disease4285
BioCentury BCIQMIPEP
ClinGenMIPEP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD4285
Chemical/Pharm GKB GenePA30822
Clinical trialMIPEP
Miscellaneous
canSAR (ICR)MIPEP (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIPEP
EVEXMIPEP
GoPubMedMIPEP
iHOPMIPEP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:09:12 CEST 2017

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