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MIR1-1HG (MIR1-1 host gene)

Identity

Alias_namesC20orf166
chromosome 20 open reading frame 166
Alias_symbol (synonym)dJ353C17.1
MIR133A2HG
Other alias
HGNC (Hugo) MIR1-1HG
LocusID (NCBI) 128826
Atlas_Id 69012
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62550453 and ends at 62570764 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR1-1HG   16159
Cards
Entrez_Gene (NCBI)MIR1-1HG  128826  MIR1-1 host gene
AliasesC20orf166; MIR133A2HG; dJ353C17.1
GeneCards (Weizmann)MIR1-1HG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:62550453-62570764 [Contig_View]  MIR1-1HG [Vega]
TCGA cBioPortalMIR1-1HG
AceView (NCBI)MIR1-1HG
Genatlas (Paris)MIR1-1HG
WikiGenes128826
SOURCE (Princeton)MIR1-1HG
Genetics Home Reference (NIH)MIR1-1HG
miRBaseMIR1-1HG
dbDEMCMIR1-1HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR1-1HG  -     chr20:62550453-62570764 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR1-1HG  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblMIR1-1HG - 20q13.33 [CytoView hg19]  MIR1-1HG - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIMIR1-1HG [Mapview hg19]  MIR1-1HG [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056985 BC110595 DA896197 F35210 GQ129300
RefSeq transcript (Entrez)NM_001302812 NM_178463
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR1-1HG
Cluster EST : UnigeneHs.86507 [ NCBI ]
CGAP (NCI)Hs.86507
Gene ExpressionMIR1-1HG [ NCBI-GEO ]   MIR1-1HG [ EBI - ARRAY_EXPRESS ]   MIR1-1HG [ SEEK ]   MIR1-1HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR1-1HG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)128826
GTEX Portal (Tissue expression)MIR1-1HG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1L0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1L0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1L0
Splice isoforms : SwissVarQ9H1L0
PhosPhoSitePlusQ9H1L0
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR1-1HG
DMDM Disease mutations128826
Blocks (Seattle)MIR1-1HG
SuperfamilyQ9H1L0
Peptide AtlasQ9H1L0
HPRD12755
IPIIPI00219653   IPI00607867   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1L0
IntAct (EBI)Q9H1L0
BioGRIDMIR1-1HG
STRING (EMBL)MIR1-1HG
ZODIACMIR1-1HG
Ontologies - Pathways
QuickGOQ9H1L0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMIR1-1HG
Atlas of Cancer Signalling NetworkMIR1-1HG
Wikipedia pathwaysMIR1-1HG
Orthology - Evolution
OrthoDB128826
Phylogenetic Trees/Animal Genes : TreeFamMIR1-1HG
HOVERGENQ9H1L0
HOGENOMQ9H1L0
Homologs : HomoloGeneMIR1-1HG
Homology/Alignments : Family Browser (UCSC)MIR1-1HG
Gene fusions - Rearrangements
Tumor Fusion PortalMIR1-1HG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIR1-1HG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIR1-1HG
dbVarMIR1-1HG
ClinVarMIR1-1HG
1000_GenomesMIR1-1HG 
Exome Variant ServerMIR1-1HG
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP128826
Genomic Variants (DGV)MIR1-1HG [DGVbeta]
DECIPHERMIR1-1HG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIR1-1HG 
Mutations
ICGC Data PortalMIR1-1HG 
TCGA Data PortalMIR1-1HG 
Broad Tumor PortalMIR1-1HG
OASIS PortalMIR1-1HG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMIR1-1HG
BioMutasearch MIR1-1HG
DgiDB (Drug Gene Interaction Database)MIR1-1HG
DoCM (Curated mutations)MIR1-1HG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIR1-1HG (select a term)
intoGenMIR1-1HG
Cancer3DMIR1-1HG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETMIR1-1HG
MedgenMIR1-1HG
Genetic Testing Registry MIR1-1HG
NextProtQ9H1L0 [Medical]
TSGene128826
GENETestsMIR1-1HG
Target ValidationMIR1-1HG
Huge Navigator MIR1-1HG [HugePedia]
snp3D : Map Gene to Disease128826
BioCentury BCIQMIR1-1HG
ClinGenMIR1-1HG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128826
Chemical/Pharm GKB GenePA25708
Clinical trialMIR1-1HG
Miscellaneous
canSAR (ICR)MIR1-1HG (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR1-1HG
EVEXMIR1-1HG
GoPubMedMIR1-1HG
iHOPMIR1-1HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:41:51 CET 2017

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