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MIR100HG (mir-100-let-7a-2 cluster host gene)

Identity

Alias_namesmir-100-let-7a-2 cluster host gene (non-protein coding)
Alias_symbol (synonym)AGD1
lncRNA-N2
Other alias
HGNC (Hugo) MIR100HG
LocusID (NCBI) 399959
Atlas_Id 55318
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 121959811 and ends at 122073770 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
MIR100HG (11q24.1) / DSC3 (18q12.1)MIR100HG (11q24.1) / GAN (16q23.2)MIR100HG (11q24.1) / HPGD (4q34.1)
MIR100HG (11q24.1) / UPF2 (10p14)PACSIN2 (22q13.2) / MIR100HG (11q24.1)RALBP1 (18p11.22) / MIR100HG (11q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR100HG   39522
Cards
Entrez_Gene (NCBI)MIR100HG  399959  mir-100-let-7a-2 cluster host gene
AliasesAGD1; lncRNA-N2
GeneCards (Weizmann)MIR100HG
Ensembl hg19 (Hinxton) [Gene_View]  chr11:121959811-122073770 [Contig_View]  MIR100HG [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr11:121959811-122073770 [Contig_View]  MIR100HG [Vega]
TCGA cBioPortalMIR100HG
AceView (NCBI)MIR100HG
Genatlas (Paris)MIR100HG
WikiGenes399959
SOURCE (Princeton)MIR100HG
Genetics Home Reference (NIH)MIR100HG
miRBaseMIR100HG
dbDEMCMIR100HG
Genomic and cartography
GoldenPath hg19 (UCSC)MIR100HG  -     chr11:121959811-122073770 -  11q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIR100HG  -     11q24.1   [Description]    (hg38-Dec_2013)
EnsemblMIR100HG - 11q24.1 [CytoView hg19]  MIR100HG - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIMIR100HG [Mapview hg19]  MIR100HG [Mapview hg38]
OMIM615965   
Gene and transcription
Genbank (Entrez)AB075498 AK021552 AK091713 AK123947 AK311309
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_033899 NW_004929381
Consensus coding sequences : CCDS (NCBI)MIR100HG
Cluster EST : UnigeneHs.732590 [ NCBI ]
CGAP (NCI)Hs.732590
Gene ExpressionMIR100HG [ NCBI-GEO ]   MIR100HG [ EBI - ARRAY_EXPRESS ]   MIR100HG [ SEEK ]   MIR100HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR100HG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)399959
GTEX Portal (Tissue expression)MIR100HG
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR100HG
DMDM Disease mutations399959
Blocks (Seattle)MIR100HG
Protein Interaction databases
BioGRIDMIR100HG
STRING (EMBL)MIR100HG
ZODIACMIR100HG
Ontologies - Pathways
Huge Navigator MIR100HG [HugePedia]
snp3D : Map Gene to Disease399959
BioCentury BCIQMIR100HG
ClinGenMIR100HG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD399959
Clinical trialMIR100HG
Miscellaneous
canSAR (ICR)MIR100HG (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR100HG
EVEXMIR100HG
GoPubMedMIR100HG
iHOPMIR100HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:09:13 CEST 2017

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