Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR100HG (mir-100-let-7a-2-mir-125b-1 cluster host gene)

Identity

Alias (NCBI)AGD1
linc-NeD125
lncRNA-N2
HGNC (Hugo) MIR100HG
HGNC Alias symbAGD1
lncRNA-N2
linc-NeD125
HGNC Alias nameadipogenesis down-regulated transcript 1
 lncRNA neuronal 2
 neuronal differentiation lncRNA hosting miR-125
HGNC Previous namemir-100-let-7a-2 cluster host gene (non-protein coding)
 mir-100-let-7a-2 cluster host gene
LocusID (NCBI) 399959
Atlas_Id 55318
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 122089103 and ends at 122105616 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MIR100HG (11q24.1) / DSC3 (18q12.1)MIR100HG (11q24.1) / GAN (16q23.2)MIR100HG (11q24.1) / HPGD (4q34.1)
MIR100HG (11q24.1) / UPF2 (10p14)PACSIN2 (22q13.2) / MIR100HG (11q24.1)RALBP1 (18p11.22) / MIR100HG (11q24.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)MIR100HG   39522
Cards
Entrez_Gene (NCBI)MIR100HG    mir-100-let-7a-2-mir-125b-1 cluster host gene
AliasesAGD1; linc-NeD125; lncRNA-N2
GeneCards (Weizmann)MIR100HG
Ensembl hg19 (Hinxton)ENSG00000255248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255248 [Gene_View]  ENSG00000255248 [Sequence]  chr11:122089103-122105616 [Contig_View]  MIR100HG [Vega]
ICGC DataPortalENSG00000255248
TCGA cBioPortalMIR100HG
AceView (NCBI)MIR100HG
Genatlas (Paris)MIR100HG
SOURCE (Princeton)MIR100HG
Genetics Home Reference (NIH)MIR100HG
miRBaseMIR100HG
dbDEMCMIR100HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR100HG  -     chr11:122089103-122105616 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR100HG  -     11q24.1   [Description]    (hg19-Feb_2009)
GoldenPathMIR100HG - 11q24.1 [CytoView hg19]  MIR100HG - 11q24.1 [CytoView hg38]
ImmunoBaseENSG00000255248
Genome Data Viewer NCBIMIR100HG [Mapview hg19]  
OMIM615965   
Gene and transcription
Genbank (Entrez)AB075498 AB485963 AK021552 AK091713 AK123947
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR100HG
Gene ExpressionMIR100HG [ NCBI-GEO ]   MIR100HG [ EBI - ARRAY_EXPRESS ]   MIR100HG [ SEEK ]   MIR100HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR100HG [ Firebrowse - Broad ]
GenevisibleExpression of MIR100HG in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)399959
GTEX Portal (Tissue expression)MIR100HG
Human Protein AtlasENSG00000255248-MIR100HG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR100HG
Human Protein Atlas [tissue]ENSG00000255248-MIR100HG [tissue]
Protein Interaction databases
BioGRIDMIR100HG
STRING (EMBL)MIR100HG
ZODIACMIR100HG
Ontologies - Pathways
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMIR100HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:18:37 CEST 2021

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