Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR1538 (microRNA 1538)

Identity

Alias_namesMIRN1538
Alias_symbol (synonym)hsa-mir-1538
Other alias
HGNC (Hugo) MIR1538
LocusID (NCBI) 100302119
Atlas_Id 69086
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 69565808 and ends at 69565868 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR1538   35382
Cards
Entrez_Gene (NCBI)MIR1538  100302119  microRNA 1538
AliasesMIRN1538; hsa-mir-1538
GeneCards (Weizmann)MIR1538
Ensembl hg19 (Hinxton)ENSG00000223109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000223109 [Gene_View]  chr16:69565808-69565868 [Contig_View]  MIR1538 [Vega]
ICGC DataPortalENSG00000223109
TCGA cBioPortalMIR1538
AceView (NCBI)MIR1538
Genatlas (Paris)MIR1538
WikiGenes100302119
SOURCE (Princeton)MIR1538
Genetics Home Reference (NIH)MIR1538
miRBaseMIR1538
dbDEMCMIR1538
Genomic and cartography
GoldenPath hg38 (UCSC)MIR1538  -     chr16:69565808-69565868 -  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR1538  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblMIR1538 - 16q22.1 [CytoView hg19]  MIR1538 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIMIR1538 [Mapview hg19]  MIR1538 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR1538
Alternative Splicing GalleryENSG00000223109
Gene ExpressionMIR1538 [ NCBI-GEO ]   MIR1538 [ EBI - ARRAY_EXPRESS ]   MIR1538 [ SEEK ]   MIR1538 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR1538 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100302119
GTEX Portal (Tissue expression)MIR1538
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR1538
DMDM Disease mutations100302119
Blocks (Seattle)MIR1538
Human Protein AtlasENSG00000223109
Protein Interaction databases
FunCoupENSG00000223109
BioGRIDMIR1538
STRING (EMBL)MIR1538
ZODIACMIR1538
Ontologies - Pathways
Huge Navigator MIR1538 [HugePedia]
snp3D : Map Gene to Disease100302119
BioCentury BCIQMIR1538
ClinGenMIR1538
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100302119
Chemical/Pharm GKB GenePA164722512
Clinical trialMIR1538
Miscellaneous
canSAR (ICR)MIR1538 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR1538
EVEXMIR1538
GoPubMedMIR1538
iHOPMIR1538
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:26:33 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.