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MIR17HG (miR-17-92a-1 cluster host gene)

Identity

Alias (NCBI)C13orf25
FGLDS2
LINC00048
MIHG1
MIRH1
MIRHG1
NCRNA00048
miR-17-92
HGNC (Hugo) MIR17HG
HGNC Alias symbFLJ14178
MIRH1
MIHG1
NCRNA00048
miR-17-92
LINC00048
HGNC Alias namenon-protein coding RNA 48
 long intergenic non-protein coding RNA 48
HGNC Previous nameC13orf25
 MIRHG1
HGNC Previous namechromosome 13 open reading frame 25
 microRNA host gene 1 (non-protein coding)
 MIR17 host gene (non-protein coding)
 miR-17-92 cluster host gene
LocusID (NCBI) 407975
Atlas_Id 51573
Location 13q31.3  [Link to chromosome band 13q31]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  Burkitt's lymphoma (BL)


External links

 

Nomenclature
HGNC (Hugo)MIR17HG   23564
Cards
Entrez_Gene (NCBI)MIR17HG    miR-17-92a-1 cluster host gene
AliasesC13orf25; FGLDS2; LINC00048; MIHG1; 
MIRH1; MIRHG1; NCRNA00048; miR-17-92
GeneCards (Weizmann)MIR17HG
Ensembl hg19 (Hinxton)ENSG00000215417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215417 [Gene_View]  ENSG00000215417 [Sequence]  - [Contig_View]  MIR17HG [Vega]
ICGC DataPortalENSG00000215417
TCGA cBioPortalMIR17HG
AceView (NCBI)MIR17HG
Genatlas (Paris)MIR17HG
SOURCE (Princeton)MIR17HG
Genetics Home Reference (NIH)MIR17HG
miRBaseMIR17HG
dbDEMCMIR17HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR17HG  -  
GoldenPath hg19 (UCSC)MIR17HG  -  
GoldenPathMIR17HG - [CytoView hg19]  MIR17HG - [CytoView hg38]
ImmunoBaseENSG00000215417
Genome Data Viewer NCBIMIR17HG [Mapview hg19]  
OMIM609415   
Gene and transcription
Genbank (Entrez)AB176707 AF339828 AK024240 BC040320 BC109081
RefSeq transcript (Entrez)NM_213723 NM_213724
Consensus coding sequences : CCDS (NCBI)MIR17HG
Gene ExpressionMIR17HG [ NCBI-GEO ]   MIR17HG [ EBI - ARRAY_EXPRESS ]   MIR17HG [ SEEK ]   MIR17HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR17HG [ Firebrowse - Broad ]
GenevisibleExpression of MIR17HG in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)407975
GTEX Portal (Tissue expression)MIR17HG
Human Protein AtlasENSG00000215417-MIR17HG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ75NE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ75NE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ75NE6
PhosPhoSitePlusQ75NE6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR17HG
SuperfamilyQ75NE6
AlphaFold pdb e-kbQ75NE6   
Human Protein Atlas [tissue]ENSG00000215417-MIR17HG [tissue]
HPRD12617
Protein Interaction databases
DIP (DOE-UCLA)Q75NE6
IntAct (EBI)Q75NE6
BioGRIDMIR17HG
STRING (EMBL)MIR17HG
ZODIACMIR17HG
Ontologies - Pathways
QuickGOQ75NE6
Ontology : AmiGOB cell homeostasis  negative regulation of B cell apoptotic process  outflow tract morphogenesis  cardiac right ventricle morphogenesis  positive regulation of muscle hyperplasia  negative regulation of transforming growth factor beta receptor signaling pathway  gene silencing by miRNA  regulation of B cell differentiation  regulation of B cell activation  negative regulation of cardiac muscle cell proliferation  positive regulation of cardiac muscle cell proliferation  ventricular septum morphogenesis  lung growth  mRNA binding involved in posttranscriptional gene silencing  
Ontology : EGO-EBIB cell homeostasis  negative regulation of B cell apoptotic process  outflow tract morphogenesis  cardiac right ventricle morphogenesis  positive regulation of muscle hyperplasia  negative regulation of transforming growth factor beta receptor signaling pathway  gene silencing by miRNA  regulation of B cell differentiation  regulation of B cell activation  negative regulation of cardiac muscle cell proliferation  positive regulation of cardiac muscle cell proliferation  ventricular septum morphogenesis  lung growth  mRNA binding involved in posttranscriptional gene silencing  
NDEx NetworkMIR17HG
Atlas of Cancer Signalling NetworkMIR17HG
Wikipedia pathwaysMIR17HG
Orthology - Evolution
OrthoDB407975
GeneTree (enSembl)ENSG00000215417
Phylogenetic Trees/Animal Genes : TreeFamMIR17HG
Homologs : HomoloGeneMIR17HG
Homology/Alignments : Family Browser (UCSC)MIR17HG
Gene fusions - Rearrangements
Fusion : QuiverMIR17HG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIR17HG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIR17HG
dbVarMIR17HG
ClinVarMIR17HG
MonarchMIR17HG
1000_GenomesMIR17HG 
Exome Variant ServerMIR17HG
GNOMAD BrowserENSG00000215417
Varsome BrowserMIR17HG
ACMGMIR17HG variants
VarityQ75NE6
Genomic Variants (DGV)MIR17HG [DGVbeta]
DECIPHERMIR17HG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIR17HG 
Mutations
ICGC Data PortalMIR17HG 
TCGA Data PortalMIR17HG 
Broad Tumor PortalMIR17HG
OASIS PortalMIR17HG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMIR17HG
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaMIR17HG
DgiDB (Drug Gene Interaction Database)MIR17HG
DoCM (Curated mutations)MIR17HG
CIViC (Clinical Interpretations of Variants in Cancer)MIR17HG
Cancer3DMIR17HG
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609415   
Orphanet22635   
DisGeNETMIR17HG
MedgenMIR17HG
Genetic Testing Registry MIR17HG
NextProtQ75NE6 [Medical]
GENETestsMIR17HG
Target ValidationMIR17HG
Huge Navigator MIR17HG [HugePedia]
ClinGenMIR17HG
Clinical trials, drugs, therapy
MyCancerGenomeMIR17HG
Protein Interactions : CTDMIR17HG
Pharm GKB GenePA165505138
PharosQ75NE6
Clinical trialMIR17HG
Miscellaneous
canSAR (ICR)MIR17HG
HarmonizomeMIR17HG
ARCHS4MIR17HG
DataMed IndexMIR17HG
Probes
Litterature
PubMed112 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXMIR17HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 20 12:44:43 CET 2022

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