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MIR17HG (miR-17-92a-1 cluster host gene)

Identity

Alias_namesC13orf25
MIRHG1
chromosome 13 open reading frame 25
microRNA host gene 1 (non-protein coding)
MIR17 host gene (non-protein coding)
miR-17-92 cluster host gene
Alias_symbol (synonym)FLJ14178
MIRH1
MIHG1
NCRNA00048
miR-17-92
LINC00048
Other aliasFGLDS2
HGNC (Hugo) MIR17HG
LocusID (NCBI) 407975
Atlas_Id 51573
Location 13q31.3  [Link to chromosome band 13q31]
Location_base_pair Starts at 91347820 and ends at 91354575 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR17HG   23564
Cards
Entrez_Gene (NCBI)MIR17HG  407975  miR-17-92a-1 cluster host gene
AliasesC13orf25; FGLDS2; LINC00048; MIHG1; 
MIRH1; MIRHG1; NCRNA00048; miR-17-92
GeneCards (Weizmann)MIR17HG
Ensembl hg19 (Hinxton)ENSG00000215417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215417 [Gene_View]  chr13:91347820-91354575 [Contig_View]  MIR17HG [Vega]
ICGC DataPortalENSG00000215417
TCGA cBioPortalMIR17HG
AceView (NCBI)MIR17HG
Genatlas (Paris)MIR17HG
WikiGenes407975
SOURCE (Princeton)MIR17HG
Genetics Home Reference (NIH)MIR17HG
miRBaseMIR17HG
dbDEMCMIR17HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR17HG  -     chr13:91347820-91354575 +  13q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR17HG  -     13q31.3   [Description]    (hg19-Feb_2009)
EnsemblMIR17HG - 13q31.3 [CytoView hg19]  MIR17HG - 13q31.3 [CytoView hg38]
Mapping of homologs : NCBIMIR17HG [Mapview hg19]  MIR17HG [Mapview hg38]
OMIM609415   614326   
Gene and transcription
Genbank (Entrez)AB176707 AF339828 AK024240 BC040320 BC109081
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR17HG
Cluster EST : UnigeneHs.652877 [ NCBI ]
CGAP (NCI)Hs.652877
Alternative Splicing GalleryENSG00000215417
Gene ExpressionMIR17HG [ NCBI-GEO ]   MIR17HG [ EBI - ARRAY_EXPRESS ]   MIR17HG [ SEEK ]   MIR17HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR17HG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)407975
GTEX Portal (Tissue expression)MIR17HG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ75NE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ75NE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ75NE6
Splice isoforms : SwissVarQ75NE6
PhosPhoSitePlusQ75NE6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR17HG
DMDM Disease mutations407975
Blocks (Seattle)MIR17HG
SuperfamilyQ75NE6
Human Protein AtlasENSG00000215417
Peptide AtlasQ75NE6
HPRD12617
IPIIPI00412776   IPI00412777   
Protein Interaction databases
DIP (DOE-UCLA)Q75NE6
IntAct (EBI)Q75NE6
FunCoupENSG00000215417
BioGRIDMIR17HG
STRING (EMBL)MIR17HG
ZODIACMIR17HG
Ontologies - Pathways
QuickGOQ75NE6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMIR17HG
Atlas of Cancer Signalling NetworkMIR17HG
Wikipedia pathwaysMIR17HG
Orthology - Evolution
OrthoDB407975
GeneTree (enSembl)ENSG00000215417
Phylogenetic Trees/Animal Genes : TreeFamMIR17HG
HOVERGENQ75NE6
HOGENOMQ75NE6
Homologs : HomoloGeneMIR17HG
Homology/Alignments : Family Browser (UCSC)MIR17HG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIR17HG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIR17HG
dbVarMIR17HG
ClinVarMIR17HG
1000_GenomesMIR17HG 
Exome Variant ServerMIR17HG
ExAC (Exome Aggregation Consortium)MIR17HG (select the gene name)
Genetic variants : HAPMAP407975
Genomic Variants (DGV)MIR17HG [DGVbeta]
DECIPHERMIR17HG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIR17HG 
Mutations
ICGC Data PortalMIR17HG 
TCGA Data PortalMIR17HG 
Broad Tumor PortalMIR17HG
OASIS PortalMIR17HG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMIR17HG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch MIR17HG
DgiDB (Drug Gene Interaction Database)MIR17HG
DoCM (Curated mutations)MIR17HG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIR17HG (select a term)
intoGenMIR17HG
Cancer3DMIR17HG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609415    614326   
Orphanet22635   
MedgenMIR17HG
Genetic Testing Registry MIR17HG
NextProtQ75NE6 [Medical]
TSGene407975
GENETestsMIR17HG
Target ValidationMIR17HG
Huge Navigator MIR17HG [HugePedia]
snp3D : Map Gene to Disease407975
BioCentury BCIQMIR17HG
ClinGenMIR17HG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD407975
Chemical/Pharm GKB GenePA165505138
Clinical trialMIR17HG
Miscellaneous
canSAR (ICR)MIR17HG (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR17HG
EVEXMIR17HG
GoPubMedMIR17HG
iHOPMIR17HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:43:27 CEST 2017

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