Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR196A1 (microRNA 196a-1)

Identity

Alias_namesMIRN196-1
MIRN196A1
microRNA 196-1
microRNA 196a
Alias_symbol (synonym)hsa-mir-196-1
hsa-mir-196a-1
Other aliasmir-196a-1
HGNC (Hugo) MIR196A1
LocusID (NCBI) 406972
Atlas_Id 50585
Location 17q21.32  [Link to chromosome band 17q21]
Location_base_pair Starts at 46709852 and ends at 46709921 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR196A1   31567
Cards
Entrez_Gene (NCBI)MIR196A1  406972  microRNA 196a-1
AliasesMIRN196-1; MIRN196A1; mir-196a-1
GeneCards (Weizmann)MIR196A1
Ensembl hg19 (Hinxton)ENSG00000210741 [Gene_View]  chr17:46709852-46709921 [Contig_View]  MIR196A1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000210741 [Gene_View]  chr17:46709852-46709921 [Contig_View]  MIR196A1 [Vega]
ICGC DataPortalENSG00000210741
TCGA cBioPortalMIR196A1
AceView (NCBI)MIR196A1
Genatlas (Paris)MIR196A1
WikiGenes406972
SOURCE (Princeton)MIR196A1
Genetics Home Reference (NIH)MIR196A1
miRBaseMIR196A1
dbDEMCMIR196A1
Genomic and cartography
GoldenPath hg19 (UCSC)MIR196A1  -     chr17:46709852-46709921 -  17q21.32   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIR196A1  -     17q21.32   [Description]    (hg38-Dec_2013)
EnsemblMIR196A1 - 17q21.32 [CytoView hg19]  MIR196A1 - 17q21.32 [CytoView hg38]
Mapping of homologs : NCBIMIR196A1 [Mapview hg19]  MIR196A1 [Mapview hg38]
OMIM608632   
Gene and transcription
Genbank (Entrez)AJ560753 LM608318
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)MIR196A1
Alternative Splicing GalleryENSG00000210741
Gene ExpressionMIR196A1 [ NCBI-GEO ]   MIR196A1 [ EBI - ARRAY_EXPRESS ]   MIR196A1 [ SEEK ]   MIR196A1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR196A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)406972
GTEX Portal (Tissue expression)MIR196A1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR196A1
DMDM Disease mutations406972
Blocks (Seattle)MIR196A1
Human Protein AtlasENSG00000210741
Protein Interaction databases
FunCoupENSG00000210741
BioGRIDMIR196A1
STRING (EMBL)MIR196A1
ZODIACMIR196A1
Ontologies - Pathways
Huge Navigator MIR196A1 [HugePedia]
snp3D : Map Gene to Disease406972
BioCentury BCIQMIR196A1
ClinGenMIR196A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD406972
Chemical/Pharm GKB GenePA164722556
Clinical trialMIR196A1
Miscellaneous
canSAR (ICR)MIR196A1 (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR196A1
EVEXMIR196A1
GoPubMedMIR196A1
iHOPMIR196A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:09:36 CEST 2017

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