Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR22HG (MIR22 host gene)

Identity

Other aliasC17orf91
HGNC (Hugo) MIR22HG
LocusID (NCBI) 84981
Atlas_Id 56849
Location 17_KI270861v1_alt  [Link to chromosome band 17]
Location_base_pair Starts at 141547 and ends at 143754 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MIR22HG (17p13.3) / TLCD2 (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR22HG   28219
Cards
Entrez_Gene (NCBI)MIR22HG  84981  MIR22 host gene
AliasesC17orf91
GeneCards (Weizmann)MIR22HG
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17_KI270861v1_alt:141547-143754 [Contig_View]  MIR22HG [Vega]
TCGA cBioPortalMIR22HG
AceView (NCBI)MIR22HG
Genatlas (Paris)MIR22HG
WikiGenes84981
SOURCE (Princeton)MIR22HG
Genetics Home Reference (NIH)MIR22HG
miRBaseMIR22HG
dbDEMCMIR22HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR22HG  -     chr17_KI270861v1_alt:141547-143754 -  17_KI270861v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR22HG  -     17_KI270861v1_alt   [Description]    (hg19-Feb_2009)
EnsemblMIR22HG - 17_KI270861v1_alt [CytoView hg19]  MIR22HG - 17_KI270861v1_alt [CytoView hg38]
Mapping of homologs : NCBIMIR22HG [Mapview hg19]  MIR22HG [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF070569 AI147777 BC007813 BC070225 BC119720
RefSeq transcript (Entrez)NM_001001870 NM_032895
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_187611
Consensus coding sequences : CCDS (NCBI)MIR22HG
Cluster EST : UnigeneHs.597755 [ NCBI ]
CGAP (NCI)Hs.597755
Gene ExpressionMIR22HG [ NCBI-GEO ]   MIR22HG [ EBI - ARRAY_EXPRESS ]   MIR22HG [ SEEK ]   MIR22HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR22HG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84981
GTEX Portal (Tissue expression)MIR22HG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0VDD5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0VDD5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0VDD5
Splice isoforms : SwissVarQ0VDD5
PhosPhoSitePlusQ0VDD5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR22HG
DMDM Disease mutations84981
Blocks (Seattle)MIR22HG
SuperfamilyQ0VDD5
Peptide AtlasQ0VDD5
IPIIPI00063333   
Protein Interaction databases
DIP (DOE-UCLA)Q0VDD5
IntAct (EBI)Q0VDD5
BioGRIDMIR22HG
STRING (EMBL)MIR22HG
ZODIACMIR22HG
Ontologies - Pathways
QuickGOQ0VDD5
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkMIR22HG
Atlas of Cancer Signalling NetworkMIR22HG
Wikipedia pathwaysMIR22HG
Orthology - Evolution
OrthoDB84981
Phylogenetic Trees/Animal Genes : TreeFamMIR22HG
HOVERGENQ0VDD5
HOGENOMQ0VDD5
Homologs : HomoloGeneMIR22HG
Homology/Alignments : Family Browser (UCSC)MIR22HG
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerMIR22HG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)MIR22HG
dbVarMIR22HG
ClinVarMIR22HG
1000_GenomesMIR22HG 
Exome Variant ServerMIR22HG
ExAC (Exome Aggregation Consortium)MIR22HG (select the gene name)
Genetic variants : HAPMAP84981
Genomic Variants (DGV)MIR22HG [DGVbeta]
DECIPHERMIR22HG [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisMIR22HG 
Mutations
ICGC Data PortalMIR22HG 
TCGA Data PortalMIR22HG 
Broad Tumor PortalMIR22HG
OASIS PortalMIR22HG [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDMIR22HG
BioMutasearch MIR22HG
DgiDB (Drug Gene Interaction Database)MIR22HG
DoCM (Curated mutations)MIR22HG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)MIR22HG (select a term)
intoGenMIR22HG
Cancer3DMIR22HG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenMIR22HG
Genetic Testing Registry MIR22HG
NextProtQ0VDD5 [Medical]
TSGene84981
GENETestsMIR22HG
Target ValidationMIR22HG
Huge Navigator MIR22HG [HugePedia]
snp3D : Map Gene to Disease84981
BioCentury BCIQMIR22HG
ClinGenMIR22HG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84981
Chemical/Pharm GKB GenePA162378552
Clinical trialMIR22HG
Miscellaneous
canSAR (ICR)MIR22HG (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR22HG
EVEXMIR22HG
GoPubMedMIR22HG
iHOPMIR22HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:59:36 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.