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MIR3178 (microRNA 3178)

Identity

Alias_symbol (synonym)hsa-mir-3178
Other aliasmir-3178
HGNC (Hugo) MIR3178
LocusID (NCBI) 100422974
Atlas_Id 55530
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2531922 and ends at 2532005 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR3178   38381
Cards
Entrez_Gene (NCBI)MIR3178  100422974  microRNA 3178
Aliasesmir-3178
GeneCards (Weizmann)MIR3178
Ensembl hg19 (Hinxton)ENSG00000266232 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266232 [Gene_View]  ENSG00000266232 [Sequence]  chr16:2531922-2532005 [Contig_View]  MIR3178 [Vega]
ICGC DataPortalENSG00000266232
TCGA cBioPortalMIR3178
AceView (NCBI)MIR3178
Genatlas (Paris)MIR3178
WikiGenes100422974
SOURCE (Princeton)MIR3178
Genetics Home Reference (NIH)MIR3178
miRBaseMIR3178
dbDEMCMIR3178
Genomic and cartography
GoldenPath hg38 (UCSC)MIR3178  -     chr16:2531922-2532005 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR3178  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblMIR3178 - 16p13.3 [CytoView hg19]  MIR3178 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIMIR3178 [Mapview hg19]  MIR3178 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM611031
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR3178
Alternative Splicing GalleryENSG00000266232
Gene ExpressionMIR3178 [ NCBI-GEO ]   MIR3178 [ EBI - ARRAY_EXPRESS ]   MIR3178 [ SEEK ]   MIR3178 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR3178 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100422974
GTEX Portal (Tissue expression)MIR3178
Human Protein AtlasENSG00000266232-MIR3178 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR3178
DMDM Disease mutations100422974
Blocks (Seattle)MIR3178
Human Protein Atlas [tissue]ENSG00000266232-MIR3178 [tissue]
Protein Interaction databases
FunCoupENSG00000266232
BioGRIDMIR3178
STRING (EMBL)MIR3178
ZODIACMIR3178
Ontologies - Pathways
Huge Navigator MIR3178 [HugePedia]
snp3D : Map Gene to Disease100422974
BioCentury BCIQMIR3178
ClinGenMIR3178
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100422974
Chemical/Pharm GKB GenePA165450172
Clinical trialMIR3178
Miscellaneous
canSAR (ICR)MIR3178 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR3178
EVEXMIR3178
GoPubMedMIR3178
iHOPMIR3178
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:21:14 CET 2018

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