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MIR340 (microRNA 340)

Identity

Alias_namesMIRN340
Alias_symbol (synonym)hsa-mir-340
Other aliasmir-340
HGNC (Hugo) MIR340
LocusID (NCBI) 442908
Atlas_Id 52370
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 180015303 and ends at 180015397 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR340   31777
Cards
Entrez_Gene (NCBI)MIR340  442908  microRNA 340
AliasesMIRN340; hsa-mir-340; mir-340
GeneCards (Weizmann)MIR340
Ensembl hg19 (Hinxton)ENSG00000198995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198995 [Gene_View]  chr5:180015303-180015397 [Contig_View]  MIR340 [Vega]
ICGC DataPortalENSG00000198995
TCGA cBioPortalMIR340
AceView (NCBI)MIR340
Genatlas (Paris)MIR340
WikiGenes442908
SOURCE (Princeton)MIR340
Genetics Home Reference (NIH)MIR340
miRBaseMIR340
dbDEMCMIR340
Genomic and cartography
GoldenPath hg38 (UCSC)MIR340  -     chr5:180015303-180015397 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR340  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblMIR340 - 5q35.3 [CytoView hg19]  MIR340 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIMIR340 [Mapview hg19]  MIR340 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM608720
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR340
Alternative Splicing GalleryENSG00000198995
Gene ExpressionMIR340 [ NCBI-GEO ]   MIR340 [ EBI - ARRAY_EXPRESS ]   MIR340 [ SEEK ]   MIR340 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR340 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)442908
GTEX Portal (Tissue expression)MIR340
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR340
DMDM Disease mutations442908
Blocks (Seattle)MIR340
Human Protein AtlasENSG00000198995
Protein Interaction databases
FunCoupENSG00000198995
BioGRIDMIR340
STRING (EMBL)MIR340
ZODIACMIR340
Ontologies - Pathways
Huge Navigator MIR340 [HugePedia]
snp3D : Map Gene to Disease442908
BioCentury BCIQMIR340
ClinGenMIR340
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD442908
Chemical/Pharm GKB GenePA164722671
Clinical trialMIR340
Miscellaneous
canSAR (ICR)MIR340 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR340
EVEXMIR340
GoPubMedMIR340
iHOPMIR340
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:25:46 CEST 2017

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