Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR3936HG (MIR3936 host gene)

Identity

Other aliasSLC22A5-AS1
HGNC (Hugo) MIR3936HG
LocusID (NCBI) 553103
Atlas_Id 57121
Location 5q31.1  [Link to chromosome band 5q31]
Location_base_pair Starts at 132311276 and ends at 132369916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR3936HG   40538
Cards
Entrez_Gene (NCBI)MIR3936HG  553103  MIR3936 host gene
AliasesSLC22A5-AS1
GeneCards (Weizmann)MIR3936HG
Ensembl hg19 (Hinxton)ENSG00000233006 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000233006 [Gene_View]  ENSG00000233006 [Sequence]  chr5:132311276-132369916 [Contig_View]  MIR3936HG [Vega]
ICGC DataPortalENSG00000233006
TCGA cBioPortalMIR3936HG
AceView (NCBI)MIR3936HG
Genatlas (Paris)MIR3936HG
WikiGenes553103
SOURCE (Princeton)MIR3936HG
Genetics Home Reference (NIH)MIR3936HG
miRBaseMIR3936HG
dbDEMCMIR3936HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR3936HG  -     chr5:132311276-132369916 -  5q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR3936HG  -     5q31.1   [Description]    (hg19-Feb_2009)
EnsemblMIR3936HG - 5q31.1 [CytoView hg19]  MIR3936HG - 5q31.1 [CytoView hg38]
Mapping of homologs : NCBIMIR3936HG [Mapview hg19]  MIR3936HG [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC043424 BX538252
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR3936HG
Cluster EST : UnigeneHs.570908 [ NCBI ]
CGAP (NCI)Hs.570908
Alternative Splicing GalleryENSG00000233006
Gene ExpressionMIR3936HG [ NCBI-GEO ]   MIR3936HG [ EBI - ARRAY_EXPRESS ]   MIR3936HG [ SEEK ]   MIR3936HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR3936HG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)553103
GTEX Portal (Tissue expression)MIR3936HG
Human Protein AtlasENSG00000233006-MIR3936HG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR3936HG
DMDM Disease mutations553103
Blocks (Seattle)MIR3936HG
Human Protein Atlas [tissue]ENSG00000233006-MIR3936HG [tissue]
IPIIPI00743728   
Protein Interaction databases
FunCoupENSG00000233006
BioGRIDMIR3936HG
STRING (EMBL)MIR3936HG
ZODIACMIR3936HG
Ontologies - Pathways
Huge Navigator MIR3936HG [HugePedia]
snp3D : Map Gene to Disease553103
BioCentury BCIQMIR3936HG
ClinGenMIR3936HG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD553103
Clinical trialMIR3936HG
Miscellaneous
canSAR (ICR)MIR3936HG (select the gene name)
DataMed IndexMIR3936HG
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR3936HG
EVEXMIR3936HG
GoPubMedMIR3936HG
iHOPMIR3936HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 17 18:24:26 CET 2019

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