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MIR3939 (microRNA 3939)

Identity

Alias_symbol (synonym)hsa-mir-3939
Other aliasmir-3939
HGNC (Hugo) MIR3939
LocusID (NCBI) 100500857
Atlas_Id 69342
Location 6q27  [Link to chromosome band 6q27]
Location_base_pair Starts at 166997807 and ends at 166997912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR3939   38931
Cards
Entrez_Gene (NCBI)MIR3939  100500857  microRNA 3939
Aliasesmir-3939
GeneCards (Weizmann)MIR3939
Ensembl hg19 (Hinxton)ENSG00000265828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265828 [Gene_View]  ENSG00000265828 [Sequence]  chr6:166997807-166997912 [Contig_View]  MIR3939 [Vega]
ICGC DataPortalENSG00000265828
TCGA cBioPortalMIR3939
AceView (NCBI)MIR3939
Genatlas (Paris)MIR3939
WikiGenes100500857
SOURCE (Princeton)MIR3939
Genetics Home Reference (NIH)MIR3939
miRBaseMIR3939
dbDEMCMIR3939
Genomic and cartography
GoldenPath hg38 (UCSC)MIR3939  -     chr6:166997807-166997912 -  6q27   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR3939  -     6q27   [Description]    (hg19-Feb_2009)
EnsemblMIR3939 - 6q27 [CytoView hg19]  MIR3939 - 6q27 [CytoView hg38]
Mapping of homologs : NCBIMIR3939 [Mapview hg19]  MIR3939 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM611265
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR3939
Alternative Splicing GalleryENSG00000265828
Gene ExpressionMIR3939 [ NCBI-GEO ]   MIR3939 [ EBI - ARRAY_EXPRESS ]   MIR3939 [ SEEK ]   MIR3939 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR3939 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100500857
GTEX Portal (Tissue expression)MIR3939
Human Protein AtlasENSG00000265828-MIR3939 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR3939
DMDM Disease mutations100500857
Blocks (Seattle)MIR3939
Human Protein Atlas [tissue]ENSG00000265828-MIR3939 [tissue]
Protein Interaction databases
FunCoupENSG00000265828
BioGRIDMIR3939
STRING (EMBL)MIR3939
ZODIACMIR3939
Ontologies - Pathways
Huge Navigator MIR3939 [HugePedia]
snp3D : Map Gene to Disease100500857
BioCentury BCIQMIR3939
ClinGenMIR3939
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100500857
Clinical trialMIR3939
Miscellaneous
canSAR (ICR)MIR3939 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR3939
EVEXMIR3939
GoPubMedMIR3939
iHOPMIR3939
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:14:14 CEST 2018

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