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MIR3978 (microRNA 3978)

Identity

Other alias-
HGNC (Hugo) MIR3978
LocusID (NCBI) 100616491
Atlas_Id 57517
Location Xq23  [Link to chromosome band Xq23]
Location_base_pair Starts at 110082118 and ends at 110082218 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MIR3978   41630
Cards
Entrez_Gene (NCBI)MIR3978  100616491  microRNA 3978
Aliases
GeneCards (Weizmann)MIR3978
Ensembl hg19 (Hinxton)ENSG00000265584 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265584 [Gene_View]  ENSG00000265584 [Sequence]  chrX:110082118-110082218 [Contig_View]  MIR3978 [Vega]
ICGC DataPortalENSG00000265584
TCGA cBioPortalMIR3978
AceView (NCBI)MIR3978
Genatlas (Paris)MIR3978
WikiGenes100616491
SOURCE (Princeton)MIR3978
Genetics Home Reference (NIH)MIR3978
miRBaseMIR3978
dbDEMCMIR3978
Genomic and cartography
GoldenPath hg38 (UCSC)MIR3978  -     chrX:110082118-110082218 +  Xq23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR3978  -     Xq23   [Description]    (hg19-Feb_2009)
EnsemblMIR3978 - Xq23 [CytoView hg19]  MIR3978 - Xq23 [CytoView hg38]
Mapping of homologs : NCBIMIR3978 [Mapview hg19]  MIR3978 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR3978
Alternative Splicing GalleryENSG00000265584
Gene ExpressionMIR3978 [ NCBI-GEO ]   MIR3978 [ EBI - ARRAY_EXPRESS ]   MIR3978 [ SEEK ]   MIR3978 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR3978 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616491
GTEX Portal (Tissue expression)MIR3978
Human Protein AtlasENSG00000265584-MIR3978 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR3978
DMDM Disease mutations100616491
Blocks (Seattle)MIR3978
Human Protein Atlas [tissue]ENSG00000265584-MIR3978 [tissue]
Protein Interaction databases
FunCoupENSG00000265584
BioGRIDMIR3978
STRING (EMBL)MIR3978
ZODIACMIR3978
Ontologies - Pathways
Huge Navigator MIR3978 [HugePedia]
snp3D : Map Gene to Disease100616491
BioCentury BCIQMIR3978
ClinGenMIR3978
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616491
Clinical trialMIR3978
Miscellaneous
canSAR (ICR)MIR3978 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR3978
EVEXMIR3978
GoPubMedMIR3978
iHOPMIR3978
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:21:38 CET 2018
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