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MIR4540 (microRNA 4540)

Identity

Alias_symbol (synonym)hsa-mir-4540
Other alias-
HGNC (Hugo) MIR4540
LocusID (NCBI) 100616278
Atlas_Id 69544
Location 9p13.2  [Link to chromosome band 9p13]
Location_base_pair Starts at 36864254 and ends at 36864308 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR4540   41670
Cards
Entrez_Gene (NCBI)MIR4540  100616278  microRNA 4540
Aliases
GeneCards (Weizmann)MIR4540
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr9:36864254-36864308 [Contig_View]  MIR4540 [Vega]
TCGA cBioPortalMIR4540
AceView (NCBI)MIR4540
Genatlas (Paris)MIR4540
WikiGenes100616278
SOURCE (Princeton)MIR4540
Genetics Home Reference (NIH)MIR4540
miRBaseMIR4540
dbDEMCMIR4540
Genomic and cartography
GoldenPath hg38 (UCSC)MIR4540  -     chr9:36864254-36864308 -  9p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR4540  -     9p13.2   [Description]    (hg19-Feb_2009)
EnsemblMIR4540 - 9p13.2 [CytoView hg19]  MIR4540 - 9p13.2 [CytoView hg38]
Mapping of homologs : NCBIMIR4540 [Mapview hg19]  MIR4540 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR4540
Gene ExpressionMIR4540 [ NCBI-GEO ]   MIR4540 [ EBI - ARRAY_EXPRESS ]   MIR4540 [ SEEK ]   MIR4540 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR4540 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616278
GTEX Portal (Tissue expression)MIR4540
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR4540
DMDM Disease mutations100616278
Blocks (Seattle)MIR4540
Protein Interaction databases
BioGRIDMIR4540
STRING (EMBL)MIR4540
ZODIACMIR4540
Ontologies - Pathways
Huge Navigator MIR4540 [HugePedia]
snp3D : Map Gene to Disease100616278
BioCentury BCIQMIR4540
ClinGenMIR4540
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616278
Clinical trialMIR4540
Miscellaneous
canSAR (ICR)MIR4540 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR4540
EVEXMIR4540
GoPubMedMIR4540
iHOPMIR4540
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:20:13 CET 2017

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