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MIR5004 (microRNA 5004)

Identity

Alias_symbol (synonym)hsa-mir-5004
Other aliasmir-5004
HGNC (Hugo) MIR5004
LocusID (NCBI) 100847012
Atlas_Id 69728
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33438331 and ends at 33438437 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5004   43532
Cards
Entrez_Gene (NCBI)MIR5004  100847012  microRNA 5004
Aliasesmir-5004
GeneCards (Weizmann)MIR5004
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:33438331-33438437 [Contig_View]  MIR5004 [Vega]
TCGA cBioPortalMIR5004
AceView (NCBI)MIR5004
Genatlas (Paris)MIR5004
WikiGenes100847012
SOURCE (Princeton)MIR5004
Genetics Home Reference (NIH)MIR5004
miRBaseMIR5004
dbDEMCMIR5004
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5004  -     chr6:33438331-33438437 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5004  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblMIR5004 - 6p21.32 [CytoView hg19]  MIR5004 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIMIR5004 [Mapview hg19]  MIR5004 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM611500
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_016137 NT_167249
Consensus coding sequences : CCDS (NCBI)MIR5004
Gene ExpressionMIR5004 [ NCBI-GEO ]   MIR5004 [ EBI - ARRAY_EXPRESS ]   MIR5004 [ SEEK ]   MIR5004 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5004 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847012
GTEX Portal (Tissue expression)MIR5004
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5004
DMDM Disease mutations100847012
Blocks (Seattle)MIR5004
Protein Interaction databases
BioGRIDMIR5004
STRING (EMBL)MIR5004
ZODIACMIR5004
Ontologies - Pathways
Huge Navigator MIR5004 [HugePedia]
snp3D : Map Gene to Disease100847012
BioCentury BCIQMIR5004
ClinGenMIR5004
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847012
Clinical trialMIR5004
Miscellaneous
canSAR (ICR)MIR5004 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5004
EVEXMIR5004
GoPubMedMIR5004
iHOPMIR5004
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:15:48 CEST 2018

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