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MIR5100 (microRNA 5100)

Identity

Alias_symbol (synonym)hsa-mir-5100
Other alias-
HGNC (Hugo) MIR5100
LocusID (NCBI) 100847014
Atlas_Id 55301
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 42997563 and ends at 42997681 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5100   43540
Cards
Entrez_Gene (NCBI)MIR5100  100847014  microRNA 5100
Aliases
GeneCards (Weizmann)MIR5100
Ensembl hg19 (Hinxton)ENSG00000263795 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263795 [Gene_View]  ENSG00000263795 [Sequence]  chr10:42997563-42997681 [Contig_View]  MIR5100 [Vega]
ICGC DataPortalENSG00000263795
TCGA cBioPortalMIR5100
AceView (NCBI)MIR5100
Genatlas (Paris)MIR5100
WikiGenes100847014
SOURCE (Princeton)MIR5100
Genetics Home Reference (NIH)MIR5100
miRBaseMIR5100
dbDEMCMIR5100
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5100  -     chr10:42997563-42997681 +  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5100  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblMIR5100 - 10q11.21 [CytoView hg19]  MIR5100 - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBIMIR5100 [Mapview hg19]  MIR5100 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5100
Alternative Splicing GalleryENSG00000263795
Gene ExpressionMIR5100 [ NCBI-GEO ]   MIR5100 [ EBI - ARRAY_EXPRESS ]   MIR5100 [ SEEK ]   MIR5100 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5100 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847014
GTEX Portal (Tissue expression)MIR5100
Human Protein AtlasENSG00000263795-MIR5100 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5100
DMDM Disease mutations100847014
Blocks (Seattle)MIR5100
Human Protein Atlas [tissue]ENSG00000263795-MIR5100 [tissue]
Protein Interaction databases
FunCoupENSG00000263795
BioGRIDMIR5100
STRING (EMBL)MIR5100
ZODIACMIR5100
Ontologies - Pathways
Huge Navigator MIR5100 [HugePedia]
snp3D : Map Gene to Disease100847014
BioCentury BCIQMIR5100
ClinGenMIR5100
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847014
Clinical trialMIR5100
Miscellaneous
canSAR (ICR)MIR5100 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5100
EVEXMIR5100
GoPubMedMIR5100
iHOPMIR5100
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:22:06 CET 2018

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