Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR516A1 (microRNA 516a-1)

Identity

Alias_namesMIRN516-1
MIRN516A1
microRNA 516-1
Alias_symbol (synonym)hsa-mir-516-1
hsa-mir-516a-1
Other aliasMIRN516A-1
mir-516a-1
HGNC (Hugo) MIR516A1
LocusID (NCBI) 574498
Atlas_Id 55990
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53756741 and ends at 53756830 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR516A1   32130
Cards
Entrez_Gene (NCBI)MIR516A1  574498  microRNA 516a-1
AliasesMIRN516-1; MIRN516A-1; MIRN516A1; mir-516a-1
GeneCards (Weizmann)MIR516A1
Ensembl hg19 (Hinxton)ENSG00000207767 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207767 [Gene_View]  chr19:53756741-53756830 [Contig_View]  MIR516A1 [Vega]
ICGC DataPortalENSG00000207767
TCGA cBioPortalMIR516A1
AceView (NCBI)MIR516A1
Genatlas (Paris)MIR516A1
WikiGenes574498
SOURCE (Princeton)MIR516A1
Genetics Home Reference (NIH)MIR516A1
miRBaseMIR516A1
dbDEMCMIR516A1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR516A1  -     chr19:53756741-53756830 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR516A1  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblMIR516A1 - 19q13.42 [CytoView hg19]  MIR516A1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIMIR516A1 [Mapview hg19]  MIR516A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM609494
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR516A1
Alternative Splicing GalleryENSG00000207767
Gene ExpressionMIR516A1 [ NCBI-GEO ]   MIR516A1 [ EBI - ARRAY_EXPRESS ]   MIR516A1 [ SEEK ]   MIR516A1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR516A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)574498
GTEX Portal (Tissue expression)MIR516A1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR516A1
DMDM Disease mutations574498
Blocks (Seattle)MIR516A1
Human Protein AtlasENSG00000207767
Protein Interaction databases
FunCoupENSG00000207767
BioGRIDMIR516A1
STRING (EMBL)MIR516A1
ZODIACMIR516A1
Ontologies - Pathways
Huge Navigator MIR516A1 [HugePedia]
snp3D : Map Gene to Disease574498
BioCentury BCIQMIR516A1
ClinGenMIR516A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574498
Chemical/Pharm GKB GenePA164722772
Clinical trialMIR516A1
Miscellaneous
canSAR (ICR)MIR516A1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR516A1
EVEXMIR516A1
GoPubMedMIR516A1
iHOPMIR516A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:07:36 CEST 2017

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