Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR516B1 (microRNA 516b-1)

Identity

Alias_namesMIRN516-4
MIRN516B1
microRNA 516-4
Alias_symbol (synonym)hsa-mir-516-4
hsa-mir-516b-1
Other aliasMIRN516B-1
mir-516b-1
HGNC (Hugo) MIR516B1
LocusID (NCBI) 574490
Atlas_Id 69760
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53736845 and ends at 53736934 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR516B1   32122
Cards
Entrez_Gene (NCBI)MIR516B1  574490  microRNA 516b-1
AliasesMIRN516-4; MIRN516B-1; MIRN516B1; mir-516b-1
GeneCards (Weizmann)MIR516B1
Ensembl hg19 (Hinxton)ENSG00000207946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207946 [Gene_View]  chr19:53736845-53736934 [Contig_View]  MIR516B1 [Vega]
ICGC DataPortalENSG00000207946
TCGA cBioPortalMIR516B1
AceView (NCBI)MIR516B1
Genatlas (Paris)MIR516B1
WikiGenes574490
SOURCE (Princeton)MIR516B1
Genetics Home Reference (NIH)MIR516B1
miRBaseMIR516B1
dbDEMCMIR516B1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR516B1  -     chr19:53736845-53736934 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR516B1  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblMIR516B1 - 19q13.42 [CytoView hg19]  MIR516B1 - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIMIR516B1 [Mapview hg19]  MIR516B1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM609489
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR516B1
Alternative Splicing GalleryENSG00000207946
Gene ExpressionMIR516B1 [ NCBI-GEO ]   MIR516B1 [ EBI - ARRAY_EXPRESS ]   MIR516B1 [ SEEK ]   MIR516B1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR516B1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)574490
GTEX Portal (Tissue expression)MIR516B1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR516B1
DMDM Disease mutations574490
Blocks (Seattle)MIR516B1
Human Protein AtlasENSG00000207946
Protein Interaction databases
FunCoupENSG00000207946
BioGRIDMIR516B1
STRING (EMBL)MIR516B1
ZODIACMIR516B1
Ontologies - Pathways
Huge Navigator MIR516B1 [HugePedia]
snp3D : Map Gene to Disease574490
BioCentury BCIQMIR516B1
ClinGenMIR516B1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574490
Chemical/Pharm GKB GenePA164722774
Clinical trialMIR516B1
Miscellaneous
canSAR (ICR)MIR516B1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR516B1
EVEXMIR516B1
GoPubMedMIR516B1
iHOPMIR516B1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:29:04 CEST 2017

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