Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR517A (microRNA 517a)

Identity

Alias_namesMIRN517A
Alias_symbol (synonym)hsa-mir-517a
Other aliasmir-517a
HGNC (Hugo) MIR517A
LocusID (NCBI) 574479
Atlas_Id 52324
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53712268 and ends at 53712354 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR517A   32111
Cards
Entrez_Gene (NCBI)MIR517A  574479  microRNA 517a
AliasesMIRN517A; mir-517a
GeneCards (Weizmann)MIR517A
Ensembl hg19 (Hinxton)ENSG00000207734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207734 [Gene_View]  chr19:53712268-53712354 [Contig_View]  MIR517A [Vega]
ICGC DataPortalENSG00000207734
TCGA cBioPortalMIR517A
AceView (NCBI)MIR517A
Genatlas (Paris)MIR517A
WikiGenes574479
SOURCE (Princeton)MIR517A
Genetics Home Reference (NIH)MIR517A
miRBaseMIR517A
dbDEMCMIR517A
Genomic and cartography
GoldenPath hg38 (UCSC)MIR517A  -     chr19:53712268-53712354 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR517A  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblMIR517A - 19q13.42 [CytoView hg19]  MIR517A - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIMIR517A [Mapview hg19]  MIR517A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY882296 LM609481
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR517A
Alternative Splicing GalleryENSG00000207734
Gene ExpressionMIR517A [ NCBI-GEO ]   MIR517A [ EBI - ARRAY_EXPRESS ]   MIR517A [ SEEK ]   MIR517A [ MEM ]
Gene Expression Viewer (FireBrowse)MIR517A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)574479
GTEX Portal (Tissue expression)MIR517A
Human Protein AtlasENSG00000207734-MIR517A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR517A
DMDM Disease mutations574479
Blocks (Seattle)MIR517A
Human Protein Atlas [tissue]ENSG00000207734-MIR517A [tissue]
Protein Interaction databases
FunCoupENSG00000207734
BioGRIDMIR517A
STRING (EMBL)MIR517A
ZODIACMIR517A
Ontologies - Pathways
Huge Navigator MIR517A [HugePedia]
snp3D : Map Gene to Disease574479
BioCentury BCIQMIR517A
ClinGenMIR517A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574479
Chemical/Pharm GKB GenePA164722776
Clinical trialMIR517A
Miscellaneous
canSAR (ICR)MIR517A (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR517A
EVEXMIR517A
GoPubMedMIR517A
iHOPMIR517A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:23:47 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.