Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR517B (microRNA 517b)

Identity

Alias_namesMIRN517B
Alias_symbol (synonym)hsa-mir-517b
Other aliasmir-517b
HGNC (Hugo) MIR517B
LocusID (NCBI) 574483
Atlas_Id 69762
Location 19q13.42  [Link to chromosome band 19q13]
Location_base_pair Starts at 53721076 and ends at 53721142 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR517B   32115
Cards
Entrez_Gene (NCBI)MIR517B  574483  microRNA 517b
AliasesMIRN517B; mir-517b
GeneCards (Weizmann)MIR517B
Ensembl hg19 (Hinxton)ENSG00000207837 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207837 [Gene_View]  chr19:53721076-53721142 [Contig_View]  MIR517B [Vega]
ICGC DataPortalENSG00000207837
TCGA cBioPortalMIR517B
AceView (NCBI)MIR517B
Genatlas (Paris)MIR517B
WikiGenes574483
SOURCE (Princeton)MIR517B
Genetics Home Reference (NIH)MIR517B
miRBaseMIR517B
dbDEMCMIR517B
Genomic and cartography
GoldenPath hg38 (UCSC)MIR517B  -     chr19:53721076-53721142 +  19q13.42   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR517B  -     19q13.42   [Description]    (hg19-Feb_2009)
EnsemblMIR517B - 19q13.42 [CytoView hg19]  MIR517B - 19q13.42 [CytoView hg38]
Mapping of homologs : NCBIMIR517B [Mapview hg19]  MIR517B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY882289 LM609484
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR517B
Alternative Splicing GalleryENSG00000207837
Gene ExpressionMIR517B [ NCBI-GEO ]   MIR517B [ EBI - ARRAY_EXPRESS ]   MIR517B [ SEEK ]   MIR517B [ MEM ]
Gene Expression Viewer (FireBrowse)MIR517B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)574483
GTEX Portal (Tissue expression)MIR517B
Human Protein AtlasENSG00000207837-MIR517B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR517B
DMDM Disease mutations574483
Blocks (Seattle)MIR517B
Human Protein Atlas [tissue]ENSG00000207837-MIR517B [tissue]
Protein Interaction databases
FunCoupENSG00000207837
BioGRIDMIR517B
STRING (EMBL)MIR517B
ZODIACMIR517B
Ontologies - Pathways
Huge Navigator MIR517B [HugePedia]
snp3D : Map Gene to Disease574483
BioCentury BCIQMIR517B
ClinGenMIR517B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD574483
Chemical/Pharm GKB GenePA164722777
Clinical trialMIR517B
Miscellaneous
canSAR (ICR)MIR517B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR517B
EVEXMIR517B
GoPubMedMIR517B
iHOPMIR517B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:15:31 CET 2017

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