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MIR5189 (microRNA 5189)

Identity

Alias (NCBI)mir-5189
HGNC (Hugo) MIR5189
HGNC Alias symbhsa-mir-5189
LocusID (NCBI) 100847057
Atlas_Id 69766
Location 16q24.2  [Link to chromosome band 16q24]
Location_base_pair Starts at 88468918 and ends at 88469031 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)MIR5189   43515
Cards
Entrez_Gene (NCBI)MIR5189    microRNA 5189
Aliasesmir-5189
GeneCards (Weizmann)MIR5189
Ensembl hg19 (Hinxton)ENSG00000263456 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000263456 [Gene_View]  ENSG00000263456 [Sequence]  chr16:88468918-88469031 [Contig_View]  MIR5189 [Vega]
ICGC DataPortalENSG00000263456
TCGA cBioPortalMIR5189
AceView (NCBI)MIR5189
Genatlas (Paris)MIR5189
SOURCE (Princeton)MIR5189
Genetics Home Reference (NIH)MIR5189
miRBaseMIR5189
dbDEMCMIR5189
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5189  -     chr16:88468918-88469031 +  16q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5189  -     16q24.2   [Description]    (hg19-Feb_2009)
GoldenPathMIR5189 - 16q24.2 [CytoView hg19]  MIR5189 - 16q24.2 [CytoView hg38]
ImmunoBaseENSG00000263456
genome Data Viewer NCBIMIR5189 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)LM611540
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5189
Alternative Splicing GalleryENSG00000263456
Gene ExpressionMIR5189 [ NCBI-GEO ]   MIR5189 [ EBI - ARRAY_EXPRESS ]   MIR5189 [ SEEK ]   MIR5189 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5189 [ Firebrowse - Broad ]
GenevisibleExpression of MIR5189 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100847057
GTEX Portal (Tissue expression)MIR5189
Human Protein AtlasENSG00000263456-MIR5189 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5189
Blocks (Seattle)MIR5189
Human Protein Atlas [tissue]ENSG00000263456-MIR5189 [tissue]
Protein Interaction databases
BioGRIDMIR5189
STRING (EMBL)MIR5189
ZODIACMIR5189
Ontologies - Pathways
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5189
EVEXMIR5189
GoPubMedMIR5189
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:15:48 CET 2020

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