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MIR5196 (microRNA 5196)

Identity

Alias_symbol (synonym)hsa-mir-5196
Other aliasmir-5196
HGNC (Hugo) MIR5196
LocusID (NCBI) 100847070
Atlas_Id 69778
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35345513 and ends at 35345627 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5196   43542
Cards
Entrez_Gene (NCBI)MIR5196  100847070  microRNA 5196
Aliasesmir-5196
GeneCards (Weizmann)MIR5196
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:35345513-35345627 [Contig_View]  MIR5196 [Vega]
TCGA cBioPortalMIR5196
AceView (NCBI)MIR5196
Genatlas (Paris)MIR5196
WikiGenes100847070
SOURCE (Princeton)MIR5196
Genetics Home Reference (NIH)MIR5196
miRBaseMIR5196
dbDEMCMIR5196
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5196  -     chr19:35345513-35345627 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5196  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblMIR5196 - 19q13.12 [CytoView hg19]  MIR5196 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIMIR5196 [Mapview hg19]  MIR5196 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM611543
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5196
Gene ExpressionMIR5196 [ NCBI-GEO ]   MIR5196 [ EBI - ARRAY_EXPRESS ]   MIR5196 [ SEEK ]   MIR5196 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5196 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100847070
GTEX Portal (Tissue expression)MIR5196
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5196
DMDM Disease mutations100847070
Blocks (Seattle)MIR5196
Protein Interaction databases
BioGRIDMIR5196
STRING (EMBL)MIR5196
ZODIACMIR5196
Ontologies - Pathways
Huge Navigator MIR5196 [HugePedia]
snp3D : Map Gene to Disease100847070
BioCentury BCIQMIR5196
ClinGenMIR5196
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100847070
Clinical trialMIR5196
Miscellaneous
canSAR (ICR)MIR5196 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5196
EVEXMIR5196
GoPubMedMIR5196
iHOPMIR5196
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:39:11 CET 2017

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