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MIR5197 (microRNA 5197)

Identity

Alias_symbol (synonym)hsa-mir-5197
Other alias-
HGNC (Hugo) MIR5197
LocusID (NCBI) 100846991
Atlas_Id 69779
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 143679860 and ends at 143679971 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR5197   43450
Cards
Entrez_Gene (NCBI)MIR5197  100846991  microRNA 5197
Aliases
GeneCards (Weizmann)MIR5197
Ensembl hg19 (Hinxton)ENSG00000266478 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266478 [Gene_View]  chr5:143679860-143679971 [Contig_View]  MIR5197 [Vega]
ICGC DataPortalENSG00000266478
TCGA cBioPortalMIR5197
AceView (NCBI)MIR5197
Genatlas (Paris)MIR5197
WikiGenes100846991
SOURCE (Princeton)MIR5197
Genetics Home Reference (NIH)MIR5197
miRBaseMIR5197
dbDEMCMIR5197
Genomic and cartography
GoldenPath hg38 (UCSC)MIR5197  -     chr5:143679860-143679971 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR5197  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblMIR5197 - 5q31.3 [CytoView hg19]  MIR5197 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIMIR5197 [Mapview hg19]  MIR5197 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR5197
Alternative Splicing GalleryENSG00000266478
Gene ExpressionMIR5197 [ NCBI-GEO ]   MIR5197 [ EBI - ARRAY_EXPRESS ]   MIR5197 [ SEEK ]   MIR5197 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR5197 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100846991
GTEX Portal (Tissue expression)MIR5197
Human Protein AtlasENSG00000266478-MIR5197 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR5197
DMDM Disease mutations100846991
Blocks (Seattle)MIR5197
Human Protein Atlas [tissue]ENSG00000266478-MIR5197 [tissue]
Protein Interaction databases
FunCoupENSG00000266478
BioGRIDMIR5197
STRING (EMBL)MIR5197
ZODIACMIR5197
Ontologies - Pathways
Huge Navigator MIR5197 [HugePedia]
snp3D : Map Gene to Disease100846991
BioCentury BCIQMIR5197
ClinGenMIR5197
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100846991
Clinical trialMIR5197
Miscellaneous
canSAR (ICR)MIR5197 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR5197
EVEXMIR5197
GoPubMedMIR5197
iHOPMIR5197
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:12:28 CET 2017

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