Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR539 (microRNA 539)

Identity

Alias_namesMIRN539
Alias_symbol (synonym)hsa-mir-539
Other aliasmir-539
HGNC (Hugo) MIR539
LocusID (NCBI) 664612
Atlas_Id 55747
Location Xp11.23  [Link to chromosome band Xp11]
Location_base_pair Starts at 101047321 and ends at 101047398 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)MIR539   32529
Cards
Entrez_Gene (NCBI)MIR539  664612  microRNA 539
AliasesMIRN539; hsa-mir-539; mir-539
GeneCards (Weizmann)MIR539
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr14:101047321-101047398 [Contig_View]  MIR539 [Vega]
TCGA cBioPortalMIR539
AceView (NCBI)MIR539
Genatlas (Paris)MIR539
WikiGenes664612
SOURCE (Princeton)MIR539
Genetics Home Reference (NIH)MIR539
miRBaseMIR539
dbDEMCMIR539
Genomic and cartography
GoldenPath hg38 (UCSC)MIR539  -     chr14:101047321-101047398 +  Xp11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR539  -     Xp11.23   [Description]    (hg19-Feb_2009)
EnsemblMIR539 - Xp11.23 [CytoView hg19]  MIR539 - Xp11.23 [CytoView hg38]
Mapping of homologs : NCBIMIR539 [Mapview hg19]  MIR539 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM609528
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR539
Gene ExpressionMIR539 [ NCBI-GEO ]   MIR539 [ EBI - ARRAY_EXPRESS ]   MIR539 [ SEEK ]   MIR539 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR539 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)664612
GTEX Portal (Tissue expression)MIR539
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR539
DMDM Disease mutations664612
Blocks (Seattle)MIR539
Protein Interaction databases
BioGRIDMIR539
STRING (EMBL)MIR539
ZODIACMIR539
Ontologies - Pathways
Huge Navigator MIR539 [HugePedia]
snp3D : Map Gene to Disease664612
BioCentury BCIQMIR539
ClinGenMIR539
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD664612
Chemical/Pharm GKB GenePA164722811
Clinical trialMIR539
Miscellaneous
canSAR (ICR)MIR539 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR539
EVEXMIR539
GoPubMedMIR539
iHOPMIR539
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 15:04:15 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.