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MIR542 (microRNA 542)

Identity

Alias_namesMIRN542
Alias_symbol (synonym)hsa-mir-542
Other aliasmir-542
HGNC (Hugo) MIR542
LocusID (NCBI) 664617
Atlas_Id 52732
Location Xq26.3  [Link to chromosome band Xq26]
Location_base_pair Starts at 134541341 and ends at 134541437 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR542   32534
Cards
Entrez_Gene (NCBI)MIR542  664617  microRNA 542
AliasesMIRN542; hsa-mir-542; mir-542
GeneCards (Weizmann)MIR542
Ensembl hg19 (Hinxton)ENSG00000207784 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207784 [Gene_View]  ENSG00000207784 [Sequence]  chrX:134541341-134541437 [Contig_View]  MIR542 [Vega]
ICGC DataPortalENSG00000207784
TCGA cBioPortalMIR542
AceView (NCBI)MIR542
Genatlas (Paris)MIR542
WikiGenes664617
SOURCE (Princeton)MIR542
Genetics Home Reference (NIH)MIR542
miRBaseMIR542
dbDEMCMIR542
Genomic and cartography
GoldenPath hg38 (UCSC)MIR542  -     chrX:134541341-134541437 -  Xq26.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR542  -     Xq26.3   [Description]    (hg19-Feb_2009)
EnsemblMIR542 - Xq26.3 [CytoView hg19]  MIR542 - Xq26.3 [CytoView hg38]
Mapping of homologs : NCBIMIR542 [Mapview hg19]  MIR542 [Mapview hg38]
Gene and transcription
Genbank (Entrez)LM609602
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR542
Alternative Splicing GalleryENSG00000207784
Gene ExpressionMIR542 [ NCBI-GEO ]   MIR542 [ EBI - ARRAY_EXPRESS ]   MIR542 [ SEEK ]   MIR542 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR542 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)664617
GTEX Portal (Tissue expression)MIR542
Human Protein AtlasENSG00000207784-MIR542 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR542
DMDM Disease mutations664617
Blocks (Seattle)MIR542
Human Protein Atlas [tissue]ENSG00000207784-MIR542 [tissue]
Protein Interaction databases
FunCoupENSG00000207784
BioGRIDMIR542
STRING (EMBL)MIR542
ZODIACMIR542
Ontologies - Pathways
Huge Navigator MIR542 [HugePedia]
snp3D : Map Gene to Disease664617
BioCentury BCIQMIR542
ClinGenMIR542
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD664617
Chemical/Pharm GKB GenePA164722813
Clinical trialMIR542
Miscellaneous
canSAR (ICR)MIR542 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR542
EVEXMIR542
GoPubMedMIR542
iHOPMIR542
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:22:19 CET 2018

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