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MIR548A1 (microRNA 548a-1)

Identity

Alias_namesMIRN548A1
Alias_symbol (synonym)hsa-mir-548a-1
Other alias
HGNC (Hugo) MIR548A1
LocusID (NCBI) 693125
Atlas_Id 69797
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 18571784 and ends at 18571880 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548A1   32796
Cards
Entrez_Gene (NCBI)MIR548A1  693125  microRNA 548a-1
AliasesMIRN548A1
GeneCards (Weizmann)MIR548A1
Ensembl hg19 (Hinxton)ENSG00000207775 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207775 [Gene_View]  ENSG00000207775 [Sequence]  chr6:18571784-18571880 [Contig_View]  MIR548A1 [Vega]
ICGC DataPortalENSG00000207775
TCGA cBioPortalMIR548A1
AceView (NCBI)MIR548A1
Genatlas (Paris)MIR548A1
WikiGenes693125
SOURCE (Princeton)MIR548A1
Genetics Home Reference (NIH)MIR548A1
miRBaseMIR548A1
dbDEMCMIR548A1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548A1  -     chr6:18571784-18571880 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548A1  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblMIR548A1 - 6p22.3 [CytoView hg19]  MIR548A1 - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIMIR548A1 [Mapview hg19]  MIR548A1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548A1
Alternative Splicing GalleryENSG00000207775
Gene ExpressionMIR548A1 [ NCBI-GEO ]   MIR548A1 [ EBI - ARRAY_EXPRESS ]   MIR548A1 [ SEEK ]   MIR548A1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548A1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)693125
GTEX Portal (Tissue expression)MIR548A1
Human Protein AtlasENSG00000207775-MIR548A1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548A1
DMDM Disease mutations693125
Blocks (Seattle)MIR548A1
Human Protein Atlas [tissue]ENSG00000207775-MIR548A1 [tissue]
Protein Interaction databases
FunCoupENSG00000207775
BioGRIDMIR548A1
STRING (EMBL)MIR548A1
ZODIACMIR548A1
Ontologies - Pathways
Huge Navigator MIR548A1 [HugePedia]
snp3D : Map Gene to Disease693125
BioCentury BCIQMIR548A1
ClinGenMIR548A1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD693125
Chemical/Pharm GKB GenePA164722817
Clinical trialMIR548A1
Miscellaneous
canSAR (ICR)MIR548A1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548A1
EVEXMIR548A1
GoPubMedMIR548A1
iHOPMIR548A1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:15:58 CEST 2018

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