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MIR548A1HG (MIR548A1 host gene)

Identity

Other alias-
HGNC (Hugo) MIR548A1HG
LocusID (NCBI) 105374956
Atlas_Id 80225
Location 6p22.3  [Link to chromosome band 6p22]
Location_base_pair Starts at 18522747 and ends at 18722898 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)MIR548A1HG   53539
Cards
Entrez_Gene (NCBI)MIR548A1HG  105374956  MIR548A1 host gene
Aliases
GeneCards (Weizmann)MIR548A1HG
Ensembl hg19 (Hinxton)ENSG00000283408 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000283408 [Gene_View]  ENSG00000283408 [Sequence]  chr6:18522747-18722898 [Contig_View]  MIR548A1HG [Vega]
ICGC DataPortalENSG00000283408
TCGA cBioPortalMIR548A1HG
AceView (NCBI)MIR548A1HG
Genatlas (Paris)MIR548A1HG
WikiGenes105374956
SOURCE (Princeton)MIR548A1HG
Genetics Home Reference (NIH)MIR548A1HG
miRBaseMIR548A1HG
dbDEMCMIR548A1HG
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548A1HG  -     chr6:18522747-18722898 +  6p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548A1HG  -     6p22.3   [Description]    (hg19-Feb_2009)
EnsemblMIR548A1HG - 6p22.3 [CytoView hg19]  MIR548A1HG - 6p22.3 [CytoView hg38]
Mapping of homologs : NCBIMIR548A1HG [Mapview hg19]  MIR548A1HG [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK098665
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548A1HG
Cluster EST : UnigeneHs.561599 [ NCBI ]
CGAP (NCI)Hs.561599
Alternative Splicing GalleryENSG00000283408
Gene ExpressionMIR548A1HG [ NCBI-GEO ]   MIR548A1HG [ EBI - ARRAY_EXPRESS ]   MIR548A1HG [ SEEK ]   MIR548A1HG [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548A1HG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)105374956
GTEX Portal (Tissue expression)MIR548A1HG
Human Protein AtlasENSG00000283408-MIR548A1HG [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548A1HG
DMDM Disease mutations105374956
Blocks (Seattle)MIR548A1HG
Human Protein Atlas [tissue]ENSG00000283408-MIR548A1HG [tissue]
Protein Interaction databases
FunCoupENSG00000283408
BioGRIDMIR548A1HG
STRING (EMBL)MIR548A1HG
ZODIACMIR548A1HG
Ontologies - Pathways
Huge Navigator MIR548A1HG [HugePedia]
snp3D : Map Gene to Disease105374956
BioCentury BCIQMIR548A1HG
ClinGenMIR548A1HG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD105374956
Clinical trialMIR548A1HG
Miscellaneous
canSAR (ICR)MIR548A1HG (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548A1HG
EVEXMIR548A1HG
GoPubMedMIR548A1HG
iHOPMIR548A1HG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:15:58 CEST 2018

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