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MIR548A3 (microRNA 548a-3)

Identity

Alias_namesMIRN548A3
Alias_symbol (synonym)hsa-mir-548a-3
Other alias
HGNC (Hugo) MIR548A3
LocusID (NCBI) 693127
Atlas_Id 54461
Location 8q22.3  [Link to chromosome band 8q22]
Location_base_pair Starts at 104484369 and ends at 104484465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MCF2L2 (3q27.1) / MIR548A3 (3q13.11)MIR548A3 (3q13.11) / TMEM163 (2q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Lung: Translocations in Squamous Cell Carcinoma


External links

Nomenclature
HGNC (Hugo)MIR548A3   32798
Cards
Entrez_Gene (NCBI)MIR548A3  693127  microRNA 548a-3
AliasesMIRN548A3
GeneCards (Weizmann)MIR548A3
Ensembl hg19 (Hinxton)ENSG00000208032 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000208032 [Gene_View]  chr8:104484369-104484465 [Contig_View]  MIR548A3 [Vega]
ICGC DataPortalENSG00000208032
TCGA cBioPortalMIR548A3
AceView (NCBI)MIR548A3
Genatlas (Paris)MIR548A3
WikiGenes693127
SOURCE (Princeton)MIR548A3
Genetics Home Reference (NIH)MIR548A3
miRBaseMIR548A3
dbDEMCMIR548A3
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548A3  -     chr8:104484369-104484465 -  8q22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548A3  -     8q22.3   [Description]    (hg19-Feb_2009)
EnsemblMIR548A3 - 8q22.3 [CytoView hg19]  MIR548A3 - 8q22.3 [CytoView hg38]
Mapping of homologs : NCBIMIR548A3 [Mapview hg19]  MIR548A3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548A3
Alternative Splicing GalleryENSG00000208032
Gene ExpressionMIR548A3 [ NCBI-GEO ]   MIR548A3 [ EBI - ARRAY_EXPRESS ]   MIR548A3 [ SEEK ]   MIR548A3 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548A3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)693127
GTEX Portal (Tissue expression)MIR548A3
Human Protein AtlasENSG00000208032-MIR548A3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548A3
DMDM Disease mutations693127
Blocks (Seattle)MIR548A3
Human Protein Atlas [tissue]ENSG00000208032-MIR548A3 [tissue]
Protein Interaction databases
FunCoupENSG00000208032
BioGRIDMIR548A3
STRING (EMBL)MIR548A3
ZODIACMIR548A3
Ontologies - Pathways
Huge Navigator MIR548A3 [HugePedia]
snp3D : Map Gene to Disease693127
BioCentury BCIQMIR548A3
ClinGenMIR548A3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD693127
Chemical/Pharm GKB GenePA164722819
Clinical trialMIR548A3
Miscellaneous
canSAR (ICR)MIR548A3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548A3
EVEXMIR548A3
GoPubMedMIR548A3
iHOPMIR548A3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:23:54 CET 2017

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