Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR548AE1 (microRNA 548ae-1)

Identity

Alias_symbol (synonym)hsa-mir-548ae-1
Other alias-
HGNC (Hugo) MIR548AE1
LocusID (NCBI) 100616305
Atlas_Id 77641
Location 2q32.1  [Link to chromosome band 2q32]
Location_base_pair Starts at 184378975 and ends at 184379044 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548AE1   41742
Cards
Entrez_Gene (NCBI)MIR548AE1  100616305  microRNA 548ae-1
Aliases
GeneCards (Weizmann)MIR548AE1
Ensembl hg19 (Hinxton)ENSG00000266808 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000266808 [Gene_View]  chr2:184378975-184379044 [Contig_View]  MIR548AE1 [Vega]
ICGC DataPortalENSG00000266808
TCGA cBioPortalMIR548AE1
AceView (NCBI)MIR548AE1
Genatlas (Paris)MIR548AE1
WikiGenes100616305
SOURCE (Princeton)MIR548AE1
Genetics Home Reference (NIH)MIR548AE1
miRBaseMIR548AE1
dbDEMCMIR548AE1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548AE1  -     chr2:184378975-184379044 +  2q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548AE1  -     2q32.1   [Description]    (hg19-Feb_2009)
EnsemblMIR548AE1 - 2q32.1 [CytoView hg19]  MIR548AE1 - 2q32.1 [CytoView hg38]
Mapping of homologs : NCBIMIR548AE1 [Mapview hg19]  MIR548AE1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548AE1
Alternative Splicing GalleryENSG00000266808
Gene ExpressionMIR548AE1 [ NCBI-GEO ]   MIR548AE1 [ EBI - ARRAY_EXPRESS ]   MIR548AE1 [ SEEK ]   MIR548AE1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548AE1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616305
GTEX Portal (Tissue expression)MIR548AE1
Human Protein AtlasENSG00000266808-MIR548AE1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548AE1
DMDM Disease mutations100616305
Blocks (Seattle)MIR548AE1
Human Protein Atlas [tissue]ENSG00000266808-MIR548AE1 [tissue]
Protein Interaction databases
FunCoupENSG00000266808
BioGRIDMIR548AE1
STRING (EMBL)MIR548AE1
ZODIACMIR548AE1
Ontologies - Pathways
Huge Navigator MIR548AE1 [HugePedia]
snp3D : Map Gene to Disease100616305
BioCentury BCIQMIR548AE1
ClinGenMIR548AE1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616305
Clinical trialMIR548AE1
Miscellaneous
canSAR (ICR)MIR548AE1 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548AE1
EVEXMIR548AE1
GoPubMedMIR548AE1
iHOPMIR548AE1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:15:37 CET 2017

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