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MIR548AE2 (microRNA 548ae-2)

Identity

Alias_symbol (synonym)hsa-mir-548ae-2
Other alias-
HGNC (Hugo) MIR548AE2
LocusID (NCBI) 100616339
Atlas_Id 69803
Location 16q12.1  [Link to chromosome band 16q12]
Location_base_pair Starts at 48274603 and ends at 48420559 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ANXA1 (9q21.13) / MIR548AE2 (16q12.1)MIR548AE2 (16q12.1) / GNA13 (17q24.1)MIR548AE2 (16q12.1) / MIR548AE2 (16q12.1)
MIR548AE2 (16q12.1) / NDRG4 (16q21)ZMYM6 (1p34.3) / MIR548AE2 (16q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548AE2   41831
Cards
Entrez_Gene (NCBI)MIR548AE2  100616339  microRNA 548ae-2
Aliases
GeneCards (Weizmann)MIR548AE2
Ensembl hg19 (Hinxton)ENSG00000265699 [Gene_View]  chr16:48274603-48420559 [Contig_View]  MIR548AE2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000265699 [Gene_View]  chr16:48274603-48420559 [Contig_View]  MIR548AE2 [Vega]
ICGC DataPortalENSG00000265699
TCGA cBioPortalMIR548AE2
AceView (NCBI)MIR548AE2
Genatlas (Paris)MIR548AE2
WikiGenes100616339
SOURCE (Princeton)MIR548AE2
Genetics Home Reference (NIH)MIR548AE2
miRBaseMIR548AE2
dbDEMCMIR548AE2
Genomic and cartography
GoldenPath hg19 (UCSC)MIR548AE2  -     chr16:48274603-48420559 +  16q12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)MIR548AE2  -     16q12.1   [Description]    (hg38-Dec_2013)
EnsemblMIR548AE2 - 16q12.1 [CytoView hg19]  MIR548AE2 - 16q12.1 [CytoView hg38]
Mapping of homologs : NCBIMIR548AE2 [Mapview hg19]  MIR548AE2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)MIR548AE2
Alternative Splicing GalleryENSG00000265699
Gene ExpressionMIR548AE2 [ NCBI-GEO ]   MIR548AE2 [ EBI - ARRAY_EXPRESS ]   MIR548AE2 [ SEEK ]   MIR548AE2 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548AE2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616339
GTEX Portal (Tissue expression)MIR548AE2
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548AE2
DMDM Disease mutations100616339
Blocks (Seattle)MIR548AE2
Human Protein AtlasENSG00000265699
Protein Interaction databases
FunCoupENSG00000265699
BioGRIDMIR548AE2
STRING (EMBL)MIR548AE2
ZODIACMIR548AE2
Ontologies - Pathways
Huge Navigator MIR548AE2 [HugePedia]
snp3D : Map Gene to Disease100616339
BioCentury BCIQMIR548AE2
ClinGenMIR548AE2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616339
Clinical trialMIR548AE2
Miscellaneous
canSAR (ICR)MIR548AE2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548AE2
EVEXMIR548AE2
GoPubMedMIR548AE2
iHOPMIR548AE2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:31:23 CET 2017

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