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MIR548AJ1 (microRNA 548aj-1)

Identity

Alias_symbol (synonym)hsa-mir-548aj-1
Other alias-
HGNC (Hugo) MIR548AJ1
LocusID (NCBI) 100616191
Atlas_Id 77116
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132115192 and ends at 132115263 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548AJ1   41884
Cards
Entrez_Gene (NCBI)MIR548AJ1  100616191  microRNA 548aj-1
Aliases
GeneCards (Weizmann)MIR548AJ1
Ensembl hg19 (Hinxton)ENSG00000265669 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265669 [Gene_View]  ENSG00000265669 [Sequence]  chr6:132115192-132115263 [Contig_View]  MIR548AJ1 [Vega]
ICGC DataPortalENSG00000265669
TCGA cBioPortalMIR548AJ1
AceView (NCBI)MIR548AJ1
Genatlas (Paris)MIR548AJ1
WikiGenes100616191
SOURCE (Princeton)MIR548AJ1
Genetics Home Reference (NIH)MIR548AJ1
miRBaseMIR548AJ1
dbDEMCMIR548AJ1
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548AJ1  -     chr6:132115192-132115263 -  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548AJ1  -     6q23.2   [Description]    (hg19-Feb_2009)
EnsemblMIR548AJ1 - 6q23.2 [CytoView hg19]  MIR548AJ1 - 6q23.2 [CytoView hg38]
Mapping of homologs : NCBIMIR548AJ1 [Mapview hg19]  MIR548AJ1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548AJ1
Alternative Splicing GalleryENSG00000265669
Gene ExpressionMIR548AJ1 [ NCBI-GEO ]   MIR548AJ1 [ EBI - ARRAY_EXPRESS ]   MIR548AJ1 [ SEEK ]   MIR548AJ1 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548AJ1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616191
GTEX Portal (Tissue expression)MIR548AJ1
Human Protein AtlasENSG00000265669-MIR548AJ1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548AJ1
DMDM Disease mutations100616191
Blocks (Seattle)MIR548AJ1
Human Protein Atlas [tissue]ENSG00000265669-MIR548AJ1 [tissue]
Protein Interaction databases
FunCoupENSG00000265669
BioGRIDMIR548AJ1
STRING (EMBL)MIR548AJ1
ZODIACMIR548AJ1
Ontologies - Pathways
Huge Navigator MIR548AJ1 [HugePedia]
snp3D : Map Gene to Disease100616191
BioCentury BCIQMIR548AJ1
ClinGenMIR548AJ1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616191
Clinical trialMIR548AJ1
Miscellaneous
canSAR (ICR)MIR548AJ1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548AJ1
EVEXMIR548AJ1
GoPubMedMIR548AJ1
iHOPMIR548AJ1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:16:01 CEST 2018

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