Atlas of Genetics and Cytogenetics in Oncology and Haematology


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MIR548AJ2 (microRNA 548aj-2)

Identity

Alias_symbol (synonym)hsa-mir-548aj-2
Other alias-
HGNC (Hugo) MIR548AJ2
LocusID (NCBI) 100616252
Atlas_Id 69805
Location Xp11.4  [Link to chromosome band Xp11]
Location_base_pair Starts at 38023895 and ends at 38023986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548AJ2   41600
Cards
Entrez_Gene (NCBI)MIR548AJ2  100616252  microRNA 548aj-2
Aliases
GeneCards (Weizmann)MIR548AJ2
Ensembl hg19 (Hinxton)ENSG00000221466 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221466 [Gene_View]  chrX:38023895-38023986 [Contig_View]  MIR548AJ2 [Vega]
ICGC DataPortalENSG00000221466
TCGA cBioPortalMIR548AJ2
AceView (NCBI)MIR548AJ2
Genatlas (Paris)MIR548AJ2
WikiGenes100616252
SOURCE (Princeton)MIR548AJ2
Genetics Home Reference (NIH)MIR548AJ2
miRBaseMIR548AJ2
dbDEMCMIR548AJ2
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548AJ2  -     chrX:38023895-38023986 -  Xp11.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548AJ2  -     Xp11.4   [Description]    (hg19-Feb_2009)
EnsemblMIR548AJ2 - Xp11.4 [CytoView hg19]  MIR548AJ2 - Xp11.4 [CytoView hg38]
Mapping of homologs : NCBIMIR548AJ2 [Mapview hg19]  MIR548AJ2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548AJ2
Alternative Splicing GalleryENSG00000221466
Gene ExpressionMIR548AJ2 [ NCBI-GEO ]   MIR548AJ2 [ EBI - ARRAY_EXPRESS ]   MIR548AJ2 [ SEEK ]   MIR548AJ2 [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548AJ2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100616252
GTEX Portal (Tissue expression)MIR548AJ2
Human Protein AtlasENSG00000221466-MIR548AJ2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548AJ2
DMDM Disease mutations100616252
Blocks (Seattle)MIR548AJ2
Human Protein Atlas [tissue]ENSG00000221466-MIR548AJ2 [tissue]
Protein Interaction databases
FunCoupENSG00000221466
BioGRIDMIR548AJ2
STRING (EMBL)MIR548AJ2
ZODIACMIR548AJ2
Ontologies - Pathways
Huge Navigator MIR548AJ2 [HugePedia]
snp3D : Map Gene to Disease100616252
BioCentury BCIQMIR548AJ2
ClinGenMIR548AJ2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100616252
Clinical trialMIR548AJ2
Miscellaneous
canSAR (ICR)MIR548AJ2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548AJ2
EVEXMIR548AJ2
GoPubMedMIR548AJ2
iHOPMIR548AJ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:00:06 CET 2017

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