Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MIR548AP (microRNA 548ap)

Identity

Alias (NCBI)-
HGNC (Hugo) MIR548AP
HGNC Alias symbhsa-mir-548ap
LocusID (NCBI) 100847084
Atlas_Id 69809
Location 15q25.3  [Link to chromosome band 15q25]
Location_base_pair Starts at 85825635 and ends at 85825730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)MIR548AP   43465
Cards
Entrez_Gene (NCBI)MIR548AP  100847084  microRNA 548ap
Aliases
GeneCards (Weizmann)MIR548AP
Ensembl hg19 (Hinxton)ENSG00000264406 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000264406 [Gene_View]  ENSG00000264406 [Sequence]  chr15:85825635-85825730 [Contig_View]  MIR548AP [Vega]
ICGC DataPortalENSG00000264406
TCGA cBioPortalMIR548AP
AceView (NCBI)MIR548AP
Genatlas (Paris)MIR548AP
WikiGenes100847084
SOURCE (Princeton)MIR548AP
Genetics Home Reference (NIH)MIR548AP
miRBaseMIR548AP
dbDEMCMIR548AP
Genomic and cartography
GoldenPath hg38 (UCSC)MIR548AP  -     chr15:85825635-85825730 +  15q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)MIR548AP  -     15q25.3   [Description]    (hg19-Feb_2009)
GoldenPathMIR548AP - 15q25.3 [CytoView hg19]  MIR548AP - 15q25.3 [CytoView hg38]
ImmunoBaseENSG00000264406
genome Data Viewer NCBIMIR548AP [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)MIR548AP
Alternative Splicing GalleryENSG00000264406
Gene ExpressionMIR548AP [ NCBI-GEO ]   MIR548AP [ EBI - ARRAY_EXPRESS ]   MIR548AP [ SEEK ]   MIR548AP [ MEM ]
Gene Expression Viewer (FireBrowse)MIR548AP [ Firebrowse - Broad ]
GenevisibleExpression of MIR548AP in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100847084
GTEX Portal (Tissue expression)MIR548AP
Human Protein AtlasENSG00000264406-MIR548AP [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)MIR548AP
DMDM Disease mutations100847084
Blocks (Seattle)MIR548AP
Human Protein Atlas [tissue]ENSG00000264406-MIR548AP [tissue]
Protein Interaction databases
FunCoupENSG00000264406
BioGRIDMIR548AP
STRING (EMBL)MIR548AP
ZODIACMIR548AP
Ontologies - Pathways
Huge Navigator MIR548AP [HugePedia]
snp3D : Map Gene to Disease100847084
BioCentury BCIQMIR548AP
ClinGenMIR548AP
Clinical trials, drugs, therapy
Protein Interactions : CTD100847084
Clinical trialMIR548AP
Miscellaneous
canSAR (ICR)MIR548AP (select the gene name)
HarmonizomeMIR548AP
DataMed IndexMIR548AP
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineMIR548AP
EVEXMIR548AP
GoPubMedMIR548AP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:16:28 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.